Sequence 1: | NP_001036250.1 | Gene: | Ekar / 43806 | FlyBaseID: | FBgn0039916 | Length: | 899 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_036705.3 | Gene: | Grin2a / 24409 | RGDID: | 2737 | Length: | 1464 | Species: | Rattus norvegicus |
Alignment Length: | 929 | Identity: | 208/929 - (22%) |
---|---|---|---|
Similarity: | 380/929 - (40%) | Gaps: | 198/929 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 20 PPLVRIGAIFSNQPGMYNSELAFRYAIHRLNMDKSLLPETT------VDYYVEYVNRFDSFETVQ 78
Fly 79 KVCKLI---RVGVQAVFSPTD-SVLATHINSICDALDIPNIG----------------------- 116
Fly 117 ----------RSAHDFSINVYPSKQLVNYAFNDVIQYLNWTRFGILHEKENGIINLHQLSRSFHG 171
Fly 172 EVHMRQVSRD-SYVSALNEFKGKEIHN--IIIDTNSNGISILLKNILQQQMNEYKYHYLFTSFDL 233
Fly 234 ETYDL--EDFKYNFVNITSFRLVDTADVGVKQILKD-IGLYSHHIFKKPYLNLHIKKSTILESEP 295
Fly 296 ALMFDSVYVFAIGLQTLEQSHSLTLLNISCEEENSWDGGLSLINYLNAVEWKGLTGPIQFKDGQR 360
Fly 361 VQFKLDLIKL-KQHSIVKVGEWTPH----GHLNITEPSMFFDAGSMNVTLVVITILETPYVMMH- 419
Fly 420 -----------------YGK-NFTGNERF------YGFCVDILETISREVGFDYILDLVPDRKYG 460
Fly 461 AKDPETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVP--TSEPTRL 523
Fly 524 FSFMNPLAIEIWIYVLIAYFLVS-LCIYIVGKLSPIEWKCINACDLENISIGN-----QFSLTDS 582
Fly 583 FWFTIG-TFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLA 646
Fly 647 SQTEISY------GTLDSGSTMTFFRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNY- 704
Fly 705 AFLMESTMLDYIVQRD--CNLTQIGG--LLDTKGYGIATPKGSPWRDKISLAILELQERGDIQML 765
Fly 766 YDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFE--FWYNFRYNYEA 828
Fly 829 TPSQSVVNNKYNQDGILES 847 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Ekar | NP_001036250.1 | PBP1_iGluR_Kainate | 24..388 | CDD:107377 | 67/417 (16%) |
ANF_receptor | 39..371 | CDD:279440 | 60/381 (16%) | ||
PBP2_iGluR_Kainate | 402..771 | CDD:270432 | 122/413 (30%) | ||
Lig_chan | 533..807 | CDD:278489 | 80/291 (27%) | ||
Grin2a | NP_036705.3 | PBP1_iGluR_NMDA_NR2 | 32..392 | CDD:107373 | 68/423 (16%) |
PBP2_iGluR_NMDA_Nr2 | 403..802 | CDD:270436 | 123/423 (29%) | ||
HisJ | <458..>541 | CDD:223904 | 37/84 (44%) | ||
Glutamate binding. /evidence=ECO:0000269|PubMed:16281028, ECO:0007744|PDB:2A5S, ECO:0007744|PDB:2A5T, ECO:0007744|PDB:4NF4, ECO:0007744|PDB:4NF8, ECO:0007744|PDB:5I56, ECO:0007744|PDB:5I57, ECO:0007744|PDB:5I58, ECO:0007744|PDB:5I59, ECO:0007744|PDB:5JTY | 511..513 | 1/1 (100%) | |||
Lig_chan | 556..828 | CDD:278489 | 80/291 (27%) | ||
Pore-forming. /evidence=ECO:0000250|UniProtKB:B7ZSK1 | 599..620 | 5/20 (25%) |