DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and Grin3b

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_579842.2 Gene:Grin3b / 170796 RGDID:621705 Length:1002 Species:Rattus norvegicus


Alignment Length:677 Identity:162/677 - (23%)
Similarity:285/677 - (42%) Gaps:141/677 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   296 ALMFDSVYVFAIGLQTLEQSH---SLTLLNISCEE---ENSWDGGLSLINYLNAVEWKGLTGPIQ 354
            |::.|.|.:.|..|.::...|   :|....::|::   ..|...|.:|..:|....::|.||.:.
  Rat   291 AVVHDMVELVAQALSSMALVHPERALLPAVVNCDDLKTGGSEATGRTLARFLGNTSFQGRTGAVW 355

  Fly   355 FKDGQRV----QFKLDLIK---LKQHSIVKVGEWTPHGHLNITEPSMFFDAGSMNV--------- 403
            .....:|    .||:..::   |...:...||.| ..|.|:. :|.    |.::.|         
  Rat   356 VTGSSQVHVSRHFKVWSLRRDPLGAPAWATVGSW-QDGQLDF-QPG----AAALRV
PSPSGTQAR 414

  Fly   404 -TLVVITILETPYVM----------------MHYGKN------------------FTGNERFYGF 433
             .|.|:|::|.|:|.                :..|.|                  .|.....||:
  Rat   415 PKLRVVTLVEHPFVFTRESDEDGQCPAGQLCLDPGTNDSARLDALFAALVNGSVPRTLRRCCYGY 479

  Fly   434 CVDILETISREVGFDYILDLVPDRKYGA-KDPETGEWNGMVAQLMKYKADLAVGSMTITYARESV 497
            |:|:||.::.::.||:.|.:|.|.|||| :|   |.|.|:|..|:..:|.:||.|.:|..||..|
  Rat   480 CIDLLERLAEDLAFDFELYIVGDGKYGALRD---GRWTGLVGDLLAGRAHMAVTSFSINSARSQV 541

  Fly   498 IDFTKPFMNLGISILFKV-PTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKLSPIEWK 561
            :|||.||.:..:.|:.:. .|:.|  :.:||.||...:|:.|..|..|.:|.      |:..||:
  Rat   542 VDFTSPFFSTSLGIMVRTRDTASP--IGAFMWPLHWSMWVGVFAALHLTALF------LTLYEWR 598

  Fly   562 CINACDLENISIGNQFSLTDS----FWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASY 622
            ..........:.|..||.:.:    :....|..:....   |:..:.|.:.:.|..|.|::::||
  Rat   599 SPYGLTPRGRNRGTVFSYSSALNLCYAILFGRTVSSKT---PKCPTGRFLMNLWAIFCLLVLSSY 660

  Fly   623 TANLAAFLTTERMINPIENAED--LASQTE-ISYGTLDSGSTMTFFRDSVIETYKKIWRSMDNKK 684
            ||||||.:..::....:....|  |...:: ..:||:...|...:.:.|..|.:..:      ::
  Rat   661 TANLAAVMVGDKTFEELSGIHDPKLHHPSQGFRFGTVWESSAEAYIKASFPEMHAHM------RR 719

  Fly   685 PSAFTTTYEDGI-------KRVNQGNYAFLMESTMLDY--IVQRDCNLTQIGGLLDTKGYGIATP 740
            .||.||.:  |:       .::|    ||:|:.::|||  .:..||.|..:|.....:||||..|
  Rat   720 HSAPTTPH--GVAMLTSDPPKLN----AFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLP 778

  Fly   741 KGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIA 805
            :.||....:|..|...:..|.|.:|:|||:|..  .| .|.....::...:|:....|:||:|..
  Rat   779 QNSPLTSNLSEFISRYKSSGFIDLLHDKWYKMV--PC-GKRVFAVTETLQMGVYHFSGLFVLLCL 840

  Fly   806 GIIVAAVVAFFEFWYNFRYNYEATPSQSVVNNKYNQDGILESERNYTPPDRSFWIEIAEELRYAS 870
            |:..|.:.:..|..:     |.....:....||.                 .:|:..::::..| 
  Rat   841 GLGSALLTSLGEHVF-----YRLVLPRIRRGNKL-----------------QYWLHTSQKIHRA- 882

  Fly   871 WCMN------KQKRPALTRTCSKCTIP 891
              :|      :|:|....|:..|..:|
  Rat   883 --LNTGPPEGQQERAEQERSGPKDELP 907

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 23/104 (22%)
ANF_receptor 39..371 CDD:279440 18/87 (21%)
PBP2_iGluR_Kainate 402..771 CDD:270432 114/430 (27%)
Lig_chan 533..807 CDD:278489 71/289 (25%)
Grin3bNP_579842.2 PBP1_iGluR_NMDA_NR3 21..405 CDD:107372 26/119 (22%)
PBP2_iGluR_NMDA_Nr3 414..808 CDD:270438 112/419 (27%)
Lig_chan 576..842 CDD:278489 71/289 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 882..910 7/29 (24%)
Involved in the trafficking and surface expression of NMDARs. /evidence=ECO:0000250 951..984
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350194
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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