DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and GRIN3B

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_619635.1 Gene:GRIN3B / 116444 HGNCID:16768 Length:1043 Species:Homo sapiens


Alignment Length:536 Identity:138/536 - (25%)
Similarity:227/536 - (42%) Gaps:90/536 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   334 GLSLINYLNAVEWKGLTGPIQFKDGQRV----QFKLDLIKLKQHSI---VKVGEWTPHGHLNITE 391
            |..|..:|....::|.|||:......:|    .||:..::......   ..||.|. .|.|:: |
Human   335 GRFLARFLANTSFQGRTGPVWVTGSSQVHMSRHFKVWSLRRDPRGAPAWATVGSWR-DGQLDL-E 397

  Fly   392 PSMFFDAGSMNV------------TLVVITILETPYVM----------------MHYGKNFTG-- 426
            |      |..:.            .|.|:|:||.|:|.                :..|.|.:.  
Human   398 P------GGASARPPPPQGAQVWPKLRVVTLLEHPFVFARDPDEDGQCPAGQLCLDPGTNDSATL 456

  Fly   427 ----------------NERFYGFCVDILETISREVGFDYILDLVPDRKYGA-KDPETGEWNGMVA 474
                            .:..||:|:|:||.::.:..||:.|.||.|.|||| :|   |.|.|:|.
Human   457 DALFAALANGSAPRALRKCCYGYCIDLLERLAEDTPFDFELYLVGDGKYGALRD---GRWTGLVG 518

  Fly   475 QLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKV-PTSEPTRLFSFMNPLAIEIWIYV 538
            .|:..:|.:||.|.:|..||..|:|||.||.:..:.|:.:. .|:.|  :.:||.||....|:.|
Human   519 DLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRARDTASP--IGAFMWPLHWSTWLGV 581

  Fly   539 LIAYFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLTD--SFWFTIGTFMQQSPDIYPRA 601
            ..|..|.:|.      |:..||:..........:....||.:.  :..:.| .|.:......|:.
Human   582 FAALHLTALF------LTVYEWRSPYGLTPRGRNRSTVFSYSSALNLCYAI-LFRRTVSSKTPKC 639

  Fly   602 MSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAED--LASQTE-ISYGTLDSGSTMT 663
            .:.|::.:.|..|.|::::||||||||.:..::....:....|  |....: ..:||:...|...
Human   640 PTGRLLMNLWAIFCLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLHHPAQGFRFGTVWESSAEA 704

  Fly   664 FFRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDY--IVQRDCNLTQI 726
            :.:.|..:.:..:.|......|........|..| :|    ||:|:.::|||  .:..||.|..:
Human   705 YIKKSFPDMHAHMRRHSAPTTPRGVAMLTSDPPK-LN----AFIMDKSLLDYEVSIDADCKLLTV 764

  Fly   727 GGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSL 791
            |.....:||||..|:.||....:|..|...:..|.|.:|:|||:|..  .| .|.....::...:
Human   765 GKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYKMV--PC-GKRVFAVTETLQM 826

  Fly   792 GLESIGGVFVVLIAGI 807
            .:....|:||:|..|:
Human   827 SIYHFAGLFVLLCLGL 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 14/60 (23%)
ANF_receptor 39..371 CDD:279440 10/40 (25%)
PBP2_iGluR_Kainate 402..771 CDD:270432 112/423 (26%)
Lig_chan 533..807 CDD:278489 68/280 (24%)
GRIN3BNP_619635.1 PBP1_iGluR_NMDA_NR3 19..405 CDD:107372 18/77 (23%)
PBP2_iGluR_NMDA_Nr3 415..808 CDD:270438 111/409 (27%)
Lig_chan 576..842 CDD:278489 68/280 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156256
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

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