DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and grin3bb

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:XP_017213803.2 Gene:grin3bb / 100333101 ZFINID:ZDB-GENE-131122-77 Length:1114 Species:Danio rerio


Alignment Length:998 Identity:218/998 - (21%)
Similarity:373/998 - (37%) Gaps:254/998 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VRIGAIFSNQPGMYNSELAFRYAIHR-----LNMDKSLLP-ETTVDYYVEYVNRFDSFETVQKVC 81
            ||:||:...:     ..:..|.|:||     .....:.|| ..::|.........|.....:.||
Zfish    47 VRLGALLPPR-----QSVRVRAALHRALSGLAESGNNFLPYNLSLDVVAREAQSGDPESLFRCVC 106

  Fly    82 KLIRV-GVQAVFS-PTDSVLATHINSICDALDIPNIG--------RSAHDFSINV---YPSKQLV 133
            :.|.| ||.||.: |........:..:...|:||.|.        ::.:.|.:.:   .|...||
Zfish   107 QDIVVQGVSAVLAFPQTQEEIVQMEFMSSFLEIPFISIIEHGEPLKTQNRFHLQMTTRIPPSGLV 171

  Fly   134 NYAFNDVIQYLNWTR-FGIL-HEKEN-GIINLHQLSRSF---HGEVHMRQVSRDSYVSA----LN 188
            .... .|:|...|.. ..:| |..|: |:::|.:|...|   ..:.|:|.....|:.:|    ::
Zfish   172 ELLL-AVLQRSGWEESMAVLCHGWEDAGLLDLLKLQGRFGWGPSQWHLRAALNLSHSTARMANIS 235

  Fly   189 EFKGKEI---HN-----IIIDTNSNGISILLKN-------------ILQQQMNEYKYHYLFTSFD 232
            :|..:..   |:     ::...:....|.:|::             |:...::....|.:.....
Zfish   236 DFLSEHFNLDHSPPASVLLFGADPECASSVLRSAHDLGLTLPTVHWIMGHPLSPDALHSIGLPLG 300

  Fly   233 LETYDLEDFK-YNFVNITSFRLVDTADVGVKQILKDIGLYSHHI--FKKPYLNLHIKKSTILESE 294
            |..|...|.| .:|....:.:|::.|......:..|:.|..:.:  |.||               
Zfish   301 LLAYGEVDHKPLDFYISDALQLINRAVTAATVVRPDLALIQNMVNCFDKP--------------- 350

  Fly   295 PALMFDSVYVFAIGLQTLEQSHSLTLLNISCEEENSWDGGLSLINYLNAVEWKGLTGP-IQFKDG 358
                               ..|.|.            ..|..:..:|:...:.||||| |..::.
Zfish   351 -------------------NKHELP------------SSGQYIARFLSNTSFVGLTGPVIVQRNL 384

  Fly   359 QRV--QFKLDLIKLKQHSI-----VKVGEWTPHGHLNITEPSMFFDAGSMNVT------------ 404
            .||  ..|:.:..|::.::     |.||.| ..|.||:.|..::..:.....|            
Zfish   385 SRVHTSHKVHIWSLRRDAVGQPTWVTVGSW-EGGRLNVEEQGLWQGSSPRQRTEGQMGREGRRWR 448

  Fly   405 ---------LVVITILETPYVMMH----------------------------YGKNFTGNERF-- 430
                     |.|:|::|.|:|...                            |.:...||:.|  
Zfish   449 AGFPVSGSRLRVVTLVEHPFVFTREVDEDGNCPAGQYCLDAGTNSSETLDHLYAERAQGNKSFLP 513

  Fly   431 -------YGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSM 488
                   ||:|:|:||.:|.::.|::.|.:|.|.||||  .:.|:|.|:|..|:...||:||.|.
Zfish   514 PDYSKCCYGYCIDLLEKLSEDMNFEFDLYIVGDGKYGA--VKGGQWTGLVGDLLSGVADMAVTSF 576

  Fly   489 TITYARESVIDFTKPFMNLGISILFK-VPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIV 552
            :|..||..|||||.||.:..:.||.: ..|:.|  :.:||.||...:|:.:.:|..:.:|.    
Zfish   577 SINSARSKVIDFTSPFFSTSLGILVRSKDTAAP--IGAFMWPLHWSMWMGIFVALHITALF---- 635

  Fly   553 GKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQS--------------PDIYPRAMS 603
              |:..|||             :.|.:|......:..|...|              ....|:..:
Zfish   636 --LTLYEWK-------------SPFGMTPHGRNRVKVFSYSSALNLCYAILFGRTVSSKTPKCWT 685

  Fly   604 TRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDL----ASQTEISYGTLDSGSTMTF 664
            .|.:.:.|..|.|::::||||||||.:..|:....:....|.    .|| ...:||:...|...:
Zfish   686 GRFLMNLWAIFCLLVLSSYTANLAAVMVGEKTFEEVSGIHDAKLHHPSQ-GFRFGTVRESSAEDY 749

  Fly   665 FRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDY--IVQRDCNLTQIG 727
            .:.|..|.::.:.:..:...|....|...|..:.     .||:|:..:|||  .:..||.|..:|
Zfish   750 MKKSFPEMHEYMRKFNEPTTPDGVATLKTDPPQL-----DAFIMDKALLDYEVSIDADCKLLTVG 809

  Fly   728 GLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLG 792
            .....:||||..|:.||....||..:...:..|.:.||:|||:|..  .| .|.....::...:|
Zfish   810 KPFAIEGYGIGLPQNSPLTSNISEFVSRYKSDGYMDMLHDKWYKVV--PC-GKRVFAVTETLQMG 871

  Fly   793 LESIGGVFVVLIAGIIVAAVV-----AF-------------FEFWYN--------FRYNYEATPS 831
            :....|:||:|..|:..|.:.     ||             |::|.:        ....||....
Zfish   872 IRHFSGLFVLLCVGVTGALLTLAGEHAFYRLVLPHIRRKQKFKYWLHTSQKIHRALNMTYEDVKR 936

  Fly   832 QSVVNNKYNQDGILESERNYTPP 854
            |.....|...   ::..:.:.||
Zfish   937 QRANTEKSCN---IQKAQPHPPP 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 79/424 (19%)
ANF_receptor 39..371 CDD:279440 70/387 (18%)
PBP2_iGluR_Kainate 402..771 CDD:270432 115/447 (26%)
Lig_chan 533..807 CDD:278489 69/293 (24%)
grin3bbXP_017213803.2 PBP1_iGluR_NMDA_NR3 29..428 CDD:107372 83/433 (19%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 113/423 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591832
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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