DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and grik6

DIOPT Version :10

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:XP_021335521.1 Gene:grik6 / 100151589 ZFINID:ZDB-GENE-130530-729 Length:465 Species:Danio rerio


Alignment Length:452 Identity:161/452 - (35%)
Similarity:257/452 - (56%) Gaps:38/452 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 LVVITILETPYVMMHYGKNFTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEW 469
            |:|.||.:.||.|       :...:..|:|:|:|..:::::||.|.:.||.|..||.:| |.|.|
Zfish    31 LIVTTIKQDPYTM-------SKGSQLEGYCMDLLTELAKKLGFKYKVHLVKDGSYGRQD-ENGNW 87

  Fly   470 NGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILF-KVPTSEPTRLFSFMNPLAIE 533
            |||:.::::.:|||||..:|:|.|||..:..|||:|..|||||. |...||....|.|::|.:.|
Zfish    88 NGMIGEVVRGEADLAVAPLTLTAAREKAVGMTKPYMQTGISILLRKDIVSEEAGFFDFLSPFSGE 152

  Fly   534 IWIYVLIAYFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIY 598
            .|..:|||||:.::||.|||:|||.||.       :..:..|.|:|..|.|:|.|....|....:
Zfish   153 TWFGILIAYFVTAVCICIVGRLSPCEWS-------QPETEPNHFTLLHSLWYTAGALSLQGAGPH 210

  Fly   599 PRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLASQTEISYGTLDSGSTMT 663
            |:|:|.|:||.||..|:::::|.|.::|::...::.....|:..||||:|..|.||||...||:.
Zfish   211 PKAVSGRVISCTWWLFAVVLLACYFSSLSSTQGSDSAPLMIKGFEDLANQDVIEYGTLAGSSTLA 275

  Fly   664 FFRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDYIVQRDCNLTQIGG 728
            ||::|...:|::|:..|:.:|  :|.::.::|:::..:|||||:.||..||..|.|.|.|.:...
Zfish   276 FFKNSNNPSYRRIYEHMERRK--SFVSSMDEGVQKAKEGNYAFIGESVSLDLAVARHCELVRAHE 338

  Fly   729 LLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGL 793
            ::..:||.|.||.||.....:|:|||:|.|.|::..|..|||.:   :|...|    :||:||..
Zfish   339 VIGMRGYSIVTPLGSAMLKNLSVAILQLSEAGELAYLRTKWWAS---SCLPDN----AKASSLRA 396

  Fly   794 ESIGGVFVVLIAGIIVAAVVAFFEFWYNFR-------------YNYEATPSQSVVNNKYNQD 842
            .|:.|:|:||..|:.:..:::.||.....|             ...|.:....:.|.|.:||
Zfish   397 HSMKGIFLVLAIGLGIGVLLSLFELTTKSRSAAGEQKKSCCTVLTQELSQRLRMTNTKRDQD 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..390 CDD:380605
PBP2_iGluR_Kainate 402..771 CDD:270432 140/366 (38%)
Lig_chan 532..806 CDD:459656 101/273 (37%)
grik6XP_021335521.1 PBP2_iGluR_non_NMDA_like 28..381 CDD:270403 140/366 (38%)
Blue background indicates that the domain is not in the aligned region.

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