DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and gria3

DIOPT Version :9

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001106494.1 Gene:gria3 / 100127683 XenbaseID:XB-GENE-1010483 Length:887 Species:Xenopus tropicalis


Alignment Length:892 Identity:314/892 - (35%)
Similarity:478/892 - (53%) Gaps:80/892 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FLLFQFL---SYGLGVPPLVRIGAIFSNQPGMYNSELAFRYAIHRLNMDKSLLPETTVDYYVEYV 68
            |||...|   |.| |.|..:.||.:|.......:|...|...:|..|.:.:..| ..:.::|:::
 Frog    10 FLLLLSLVGESCG-GFPNTINIGGLFMRNTIQEHSAFLFAVQLHNTNQNNTERP-FQLFHHVDHL 72

  Fly    69 NRFDSFETVQKVCKLIRVGVQAVFSPTDSVLATHINSICDALD----IPNIGRSAH-DFSINVYP 128
            :..:||......|.....||.|:|...|.:....:.|.|.||.    .|:....|. .|.|.:.|
 Frog    73 DSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRP 137

  Fly   129 SKQLVNYAFNDVIQYLNWTRFGILHEKENGIINLHQLSRSF---HGEVHMRQVSRDSYVSALNEF 190
            .   :..|...::...:|.:|..|::.|.|...|..:..:.   :.:|..|.|..   :..:.||
 Frog   138 P---LKGAILTLLNEYDWQKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGN---IKDVQEF 196

  Fly   191 K-------GKEIHNIIIDTNSNGISILLKNILQQQMNEYKYHYLFTSFDLETYDLEDFKYNFVNI 248
            |       .::....:||.....|:.:|:.::....:...|||:..:.....:.||...:...|:
 Frog   197 KRIIEEMDRRQEKRFVIDCEVERINTILEQVVILGKHTRGYHYMLANLGFTGFTLERVMHGGANV 261

  Fly   249 TSFRLVDTADVGVKQILKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFDSVYVFAIGLQTLE 313
            |.|::|:..:..|:|.|:.........|.:       .::|.|:...||..|:|.|.|...:.|.
 Frog   262 TGFQIVNNENPIVQQFLQRWVRLDEREFPE-------ARNTPLKYTSALTHDAVLVIAEAFRYLR 319

  Fly   314 QSHSLTLLNISCEEENS-----------WDGGLSLINYLNAVEWKGLTGPIQFKD-GQRVQFKLD 366
            :.      .:......|           |..|:.:...|..|:.:|:||.|||.. |:|..:.:|
 Frog   320 RQ------RVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTID 378

  Fly   367 LIKLKQHSIVKVGEWTPHGHLNITEPSM--FFDAGSM-NVTLVVITILETPYVMMHYGKN---FT 425
            :.::......|||.|..:... :..|..  ..::.|: |.|::|.||||.||||..  ||   ..
 Frog   379 VYEMTATKPRKVGHWNEYERF-VPAPDQQPTNESSSVENKTIIVTTILENPYVMKK--KNHELLD 440

  Fly   426 GNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTI 490
            ||:::.|:|||:...|::.||..|.|.:|.|.||||:||||..|||||.:|:..:||:||..:||
 Frog   441 GNDKYEGYCVDLASEIAKHVGIKYKLSIVEDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTI 505

  Fly   491 TYARESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKL 555
            |..||.||||:||||:|||||:.|.|......:|||::|||.|||:.::.||..||:.:::|.:.
 Frog   506 TLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRF 570

  Fly   556 SPIEWKCIN---ACDLEN-ISIGNQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSL 616
            ||.||...:   |.|.:| ....|:|.:.:|.||::|.||||..||.||::|.||:...|.||:|
 Frog   571 SPYEWHLEDTDEARDPQNPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTL 635

  Fly   617 IIVASYTANLAAFLTTERMINPIENAEDLASQTEISYGTLDSGSTMTFFRDSVIETYKKIWRSMD 681
            ||::|||||||||||.|||::|||:|||||.||||:|||||||||..|||.|.|..|:|:|..|.
 Frog   636 IIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWSYMK 700

  Fly   682 NKKPSAFTTTYEDGIKRV--NQGNYAFLMESTMLDYIVQR-DCNLTQIGGLLDTKGYGIATPKGS 743
            :.:||.||.|.:||:.||  ::|.:|||:||||.:||.|| .|:..::||.||:||||:||||||
 Frog   701 SAEPSVFTKTTDDGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGS 765

  Fly   744 PWRDKISLAILELQERGDIQMLYDKWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGII 808
            .....::||:|:|.|:|.:..|.:|||.:..| |..|::..:.|.::|.|.::.|||.:|:.|:.
 Frog   766 ALGTPVNLAVLKLSEQGILDKLKNKWWYDKGE-CGAKDSGSKDKTSALSLSNVAGVFYILVGGLG 829

  Fly   809 VAAVVAFFEFWYNFR------------YNYEATPSQSVVNNKYNQDG 843
            :|.:||..||.|..|            .|::..|:.|..|....::|
 Frog   830 LAMMVALIEFCYKSRAESKRMKLTKNAQNFKPPPAASTQNYATYREG 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 83/390 (21%)
ANF_receptor 39..371 CDD:279440 75/358 (21%)
PBP2_iGluR_Kainate 402..771 CDD:270432 197/378 (52%)
Lig_chan 533..807 CDD:278489 138/280 (49%)
gria3NP_001106494.1 Periplasmic_Binding_Protein_Type_1 29..400 CDD:324556 83/391 (21%)
PBP2_iGluR_AMPA 416..798 CDD:270433 199/384 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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