DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and slc6a17

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001243653.1 Gene:slc6a17 / 798635 ZFINID:ZDB-GENE-030131-8187 Length:730 Species:Danio rerio


Alignment Length:626 Identity:208/626 - (33%)
Similarity:308/626 - (49%) Gaps:123/626 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 PD----RGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMEL 116
            ||    |.:|:||:.:||:.||.::||||||||||||.||||||:::||.|.|.|.|||:||:||
Zfish    57 PDLEDGRPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYFILLILIGIPLFFLEL 121

  Fly   117 ALGQMLTIGGLGVFK-IAPIFKGIGYAAAVMSC-WMNVYYIVILAWAVFYFFMSMRADVPWRTCN 179
            |:||.:..|.:||:. :.|...||| |:::|.| ::.:||.||:.|::||||.|.:..:||..|.
Zfish   122 AVGQRIRRGSIGVWNYVCPRLGGIG-ASSLMVCGFVGLYYNVIIGWSIFYFFQSFQYPLPWSDCP 185

  Fly   180 NWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEE 244
                        .|||                ...|:.....|.:.....||.|..|.|:..|.:
Zfish   186 ------------IRKN----------------GSQAIVEPECEKSSATTYFWYRETLNITSTIAD 222

  Fly   245 IGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFY 309
            .|.:.|.:..:||..||:....:.||::.:|||:||::|||||:|...||||:.|.||::||...
Zfish   223 SGGLNWRMTLSLLAAWIIVCLAVIKGIQSSGKVMYFSSLFPYVVLFCFLVRGLFLKGAVDGIAHM 287

  Fly   310 IIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGF 374
            ..|....:...:||.:|.||:||:.|||.|.::|..||||..||.:.||::|..:|..||:.|..
Zfish   288 FTPKLEIMLEPQVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCHFDAVLVSVINFLTSILATL 352

  Fly   375 VIFSVIGFMA------------------------------------HEQQRPVADV--------- 394
            |:|:|:||.|                                    |......|::         
Zfish   353 VVFAVLGFKANIMNEKCVVENAEKILGYLNSNVLSHDLIPPHVNFSHLTTSDYAEMYGVIKIVKE 417

  Fly   395 -------------------AASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTME 440
                               |..|.||||:.:..|:...|.||.||.:|||||:.:||.|...||.
Zfish   418 DSFAQLGLEQCLLEDELNKAVQGTGLAFIAFTEAMTHFPASPFWSVMFFFMLINLGLGSMIGTMT 482

  Fly   441 GFITAIIDEWPQLLRKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFE 505
            |..|.|:|.:    :.|||......|.:::|.||..:.:.|.|...:.|.|: :|..|..::..|
Zfish   483 GITTPILDTF----KIRKEYLTVGCCIVAFLCGLLFVQRSGNYFVTMFDDYS-AGLPLTIVVILE 542

  Fly   506 CVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLDY----- 565
            .||::|.||..||...::||:|:.|...:.:.|...:| :||.:.....|....:..|.|     
Zfish   543 NVSVAWIYGTKRFMQDLEDMLGFRPYSVYFYLWKYVSP-VCLIILISASVVEMAISPLGYNAWVQ 606

  Fly   566 --------SYPWWAHAFGWFTALSSMLYIPL-----YMFWL 593
                    |||.||....:...:.:||.:||     :..||
Zfish   607 DLAMERFQSYPPWAIVMCFALIIVAMLPLPLVFIARHFNWL 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 206/620 (33%)
slc6a17NP_001243653.1 SLC5-6-like_sbd 63..651 CDD:294310 206/620 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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