DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and Slc6a11

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_077348.1 Gene:Slc6a11 / 79213 RGDID:628737 Length:627 Species:Rattus norvegicus


Alignment Length:571 Identity:308/571 - (53%)
Similarity:405/571 - (70%) Gaps:24/571 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 DRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQM 121
            :||.|::|::|:|||.|..|||||||||||||||||||||::||::.....|||:||:|.||||.
  Rat    44 ERGHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETALGQF 108

  Fly   122 LTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTV 185
            .:.||:..: ::.|:|:|||||..|:...:|||||:|||||:||.......::||.||.:.|||.
  Rat   109 TSEGGITCWRRVCPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLSNCFTTELPWATCGHEWNTE 173

  Fly   186 NCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGNIRW 250
            .|| ::::.|.           .....||..|.||     ||.||||||.|.||.|||.|||:||
  Rat   174 KCV-EFQKLNF-----------SNYSHVSLQNATS-----PVMEFWERRVLAISDGIEHIGNLRW 221

  Fly   251 ELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNFS 315
            |||..||..|.:||||||||.|.||||||.||.|||::|.|||:||:|||||.||||||:.|:.|
  Rat   222 ELALCLLAAWTICYFCIWKGTKSTGKVVYVTATFPYIMLLILLIRGVTLPGASEGIKFYLYPDLS 286

  Fly   316 KLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVI 380
            :|::.:||:||.|||||||.:.||.|.||||||.:.||.|:|.:::|.:||.||..|||.||||:
  Rat   287 RLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNNNCYRDCIMLCCLNSGTSFVAGFAIFSVL 351

  Fly   381 GFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITA 445
            ||||:||..|:|:||.|||||||:.||.||..:|.||:|:.|||.||:.:||||||..:|..:||
  Rat   352 GFMAYEQGVPIAEVAESGPGLAFIAYPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTA 416

  Fly   446 IIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECVS 508
            ::|.:|::.|:  |:|:.|..:..:||.:||..:|:|||||||:.||||.||.|||::..||||.
  Rat   417 VVDMYPKVFRRGYRRELLILALSIVSYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFECVC 481

  Fly   509 ISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLD-YSYPWWAH 572
            |.|.||.:||||.|:|||||.|....|:||.|.||.||.|:|.|.:|::.|:||.: |:||.|.:
  Rat   482 IGWVYGSNRFYDNIEDMIGYRPLSLIKWCWKVVTPGICAGIFIFFLVKYKPLKYNNVYTYPAWGY 546

  Fly   573 AFGWFTALSSMLYIPLYMF-WLWKRTPGELSEKIRALVRIDEDVTRLREKM 622
            ..||..||||||.|||::| .||| |.|.|.||::.|.....|: ::|.|:
  Rat   547 GIGWLMALSSMLCIPLWIFIKLWK-TEGTLPEKLQKLTVPSADL-KMRGKL 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 305/557 (55%)
Slc6a11NP_077348.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..36
SLC6sbd_GAT3 44..585 CDD:212077 305/558 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

Return to query results.
Submit another query.