DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and slc6a13

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001072913.1 Gene:slc6a13 / 780375 XenbaseID:XB-GENE-5947897 Length:601 Species:Xenopus tropicalis


Alignment Length:582 Identity:301/582 - (51%)
Similarity:404/582 - (69%) Gaps:24/582 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 PTTTDTSNKQQLVKIEQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYII 102
            ||......:.::...:.:.:||.|::|::|:|||.|..|||||||||||||||||||||.:||:|
 Frog    17 PTKPLMEKEPKMEDGDMMIERGQWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLI 81

  Fly   103 TLFLAGIPMFFMELALGQMLTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFF 166
            .||..|||:||:|.||||..:.||:..: ||.|:|:||||::.|:...:|.||||:||||:||.|
 Frog    82 FLFTCGIPVFFLETALGQYTSQGGVTAWRKICPLFEGIGYSSQVIVMLLNCYYIVVLAWALFYLF 146

  Fly   167 MSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFW 231
            .|..:::||.:|.:.|||.||:..|:..:.|                   |:| |..|..|.|||
 Frog   147 NSFTSELPWASCGHSWNTENCLDFYKGNSTH-------------------NVT-LNGTSSVIEFW 191

  Fly   232 ERRALQISHGIEEIGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRG 296
            |||.|:||.||:.||.:.||||..|||.||:||||||||||.|||||||||.|||::|.:||:||
 Frog   192 ERRVLRISDGIDNIGGLHWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLIVLLIRG 256

  Fly   297 ITLPGALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIV 361
            ::|||||.||:||:.|:.|:|.:.:||:||.|||||||.:.||.|.|||||||:.||.|:|.:.:
 Frog   257 VSLPGALTGIQFYLYPDLSRLQDPQVWMDAGTQIFFSYAICLGCLTALGSYNKYNNNCYRDCVAL 321

  Fly   362 CTVNSSTSMFAGFVIFSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFM 426
            |.:||.||..|||.|||::||||.||...::|||.|||||||:.||.||..:|.||:|:|.||||
 Frog   322 CFLNSGTSFVAGFAIFSILGFMAEEQGVHISDVAESGPGLAFIAYPRAVSMMPFSPLWACFFFFM 386

  Fly   427 LLLIGLDSQFCTMEGFITAIIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCITQGGMYIFQILD 489
            ::|:||||||..:|..:||::|.:|.:.||  |:|:.|..|..:|:||||..:|:||||:||:.|
 Frog   387 VILLGLDSQFVCVESLVTAVVDMYPTIFRKKNRRELLILGVSMISFLVGLIMLTEGGMYVFQLFD 451

  Fly   490 SYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNI 554
            .||.||.|||::..||.:.:.|.||.|.|||.::.||||.||...|:||...|||:|:..|.|::
 Frog   452 YYAASGMCLLFVAIFETLCVGWVYGADNFYDKVEHMIGYRPTGIIKYCWLFVTPAVCMATFLFSL 516

  Fly   555 VQWTPVKY-LDYSYPWWAHAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIRALVRIDEDV 615
            |::||:.| ..|.||||..|.||..|||||:.|||::.:......|.|.|:.|.|...|.|:
 Frog   517 VKYTPLTYNKHYVYPWWGDAIGWLLALSSMVCIPLWVGYKLSTIKGSLMERFRQLTFPDPDL 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 297/556 (53%)
slc6a13NP_001072913.1 SLC5-6-like_sbd 37..579 CDD:382020 299/562 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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