DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and Slc6a21

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_006541333.1 Gene:Slc6a21 / 76713 MGIID:1923963 Length:749 Species:Mus musculus


Alignment Length:700 Identity:178/700 - (25%)
Similarity:306/700 - (43%) Gaps:128/700 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 HTTSLQSSSPTTTDTSNKQQLVKIEQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGG 93
            ||.|.:|.:||:.....:.:.|::.::|:... :.|.:.||.:|..:||||:.|||||||::|||
Mouse    20 HTASKKSDNPTSVSRGFRTREVRVTKIPNHFQ-AKKTENILILVAFSIGLGSTWRFPYLCHQNGG 83

  Fly    94 GAFILPYIITLFLAGIPMFFMELALGQMLTIGGLGVFK-IAPIFKGIGYAAAVMSCWMNVYY-IV 156
            |:|:|.|.|.|.|.|||:.:||:.:||.|.:..:..:| :.|...|:|| :.:::|.:.|.| ..
Mouse    84 GSFLLMYFILLLLLGIPLMYMEMVIGQWLRMDNIQAWKYLVPWLSGVGY-SNILACVLVVLYNSA 147

  Fly   157 ILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSL 221
            :::|::||...|....:||:.|....|.                .::.|.|   |..|       
Mouse   148 LVSWSLFYLGQSFDYPLPWQNCPLVENL----------------SMVAGNT---CLWS------- 186

  Fly   222 ELTDPVKEFWERRALQISHGIEE-IGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFP 285
               :|.:.||....||.|:.:|| |..:...:...|...||..|..:...:|.:..::.|:.||.
Mouse   187 ---EPHQYFWYHTLLQASNQMEEGIEVLVLNVTLCLFATWIFLYVTMVTRIKISVLMMIFSILFS 248

  Fly   286 YVLLTILLVRGITLPGALEGIKFYIIP-NFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNK 349
            .|||....:|.:.|.|::....:.::. ..|.|::.:.|..|...:.:|.|||:||::...:|..
Mouse   249 NVLLLCFFIRTLFLNGSVRASLWRLVTIELSILSSLDAWRQAGGHVLYSLGLGMGTIITFSTYQP 313

  Fly   350 FTNNVYKDALIVCTVNSSTSMFAGFVIFSVIGF-------------------------------- 382
            ...|..|.|..|..||.:||:.:.||||.|:||                                
Mouse   314 RGENYIKWASFVAMVNLATSLLSSFVIFLVMGFWTTTSGTMCIKRSVSNLINLIANGVLPKAAWP 378

  Fly   383 ---MAHE----------------------QQRPVA-----DVAASGPGLAFLVYPSAVLQLPGSP 417
               :.|:                      |..|.:     :....||||:::.:..|:...|||.
Mouse   379 PGDIIHKPPLEYLAWINQLPNNLKSQVIHQTLPCSILIQKEKIMEGPGLSYVAFSQAISLFPGSS 443

  Fly   418 MWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRKRKEIFIAIVCALSYLVGLTCITQGGM 482
            .|:.:||..|.::||.:....:||.:.. :.:......|...:...:||...:|..|...::.|.
Mouse   444 FWAIIFFMSLAIMGLGTMLTLLEGIVLP-LQKSISTFAKHPNLVQVLVCLGGFLGSLVFSSRPGS 507

  Fly   483 YIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVW--WKFCWC-VTTPA 544
            |:..:.|...|. ..|:.::..:.:|::|.||:.||...:...:|  ..||  :.|.|. ||.|.
Mouse   508 YVVFLFDDLLVP-MVLIIIVVIQNLSLAWLYGIKRFRAEVFGQLG--SLVWSPFTFLWSYVTLPT 569

  Fly   545 --ICLGVFFFNI--------VQWTPVKYLDYSYPWWAHAFGWFTALSSMLYIPLYMF----WLWK 595
              :.|.::|.|:        |.|......:...|:.....||.|.||.:..:|:.::    |.:.
Mouse   570 LLVLLTIYFLNLYYSGSPYYVSWNDSMSHEVKQPYKKIPLGWVTFLSVLALLPILVYPLQHWWYL 634

  Fly   596 RTPG--ELSEK---IRALVRIDEDVTR-----LREKMLREAYAKEIEFNS 635
            ..|.  |..||   .:..|.:...||:     :|:..||.....:..|.|
Mouse   635 DDPNICETLEKPLSSKKTVTVPNRVTQWPVHPMRKLTLRNQEKSKALFQS 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 163/640 (25%)
Slc6a21XP_006541333.1 SLC5-6-like_sbd 48..622 CDD:382020 156/608 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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