DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and slc6a4a

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001035061.1 Gene:slc6a4a / 664719 ZFINID:ZDB-GENE-060314-1 Length:646 Species:Danio rerio


Alignment Length:608 Identity:253/608 - (41%)
Similarity:379/608 - (62%) Gaps:39/608 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GDGGGDVC---KHESIEMSKELGHTTSLQSSSPTTTDTSNKQQLVKIEQLPDRGSWSSKMDFILS 70
            |.|.|.|.   :..|.:..||...|.:.:.::|.|..|...|| ..::  |.|.:||.||||:||
Zfish    42 GSGPGQVSNGYRSTSPQSPKEGAGTGTDRVNTPGTFRTLVVQQ-TSLD--PPRETWSKKMDFLLS 103

  Fly    71 VVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQMLTIGGLGVFK-IAP 134
            |:|.|:.|||||||||:||:||||||:|||::.....|:|:|:|||||||....|.:.::| :.|
Zfish   104 VIGYAVDLGNVWRFPYICYQNGGGAFLLPYLLMAVFGGVPLFYMELALGQFHRSGCISIWKHVCP 168

  Fly   135 IFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCW 199
            ||||||:|..:::.::..||..|:|||::|...|.||.:||.||||.|||.|| :.|...:|:  
Zfish   169 IFKGIGFAICIIALYIAFYYNTIMAWALYYLLSSFRATLPWTTCNNRWNTPNC-THYLSTDLN-- 230

  Fly   200 DKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQI--SHGIEEIGNIRWELAGTLLLVWIL 262
               ::.|...:              .|.:||:.|:.||:  |.|:.::|.:.|:||..||.::.:
Zfish   231 ---VSWTNNSI--------------SPAEEFYVRQVLQVHLSPGLHQLGWVSWQLALCLLFIFTV 278

  Fly   263 CYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNFSKLTNSEVWIDAV 327
            .||.||||||.:||||:.||.|||::|.|||:||.|||||..|:.||:.|::.||..:.||:||.
Zfish   279 VYFSIWKGVKTSGKVVWVTATFPYLVLLILLIRGATLPGAWRGVVFYLKPDWKKLLTTTVWLDAA 343

  Fly   328 TQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQQRPVA 392
            .|||||.|.|.|.|:|..|||.|.||.||||||..:||..||..:|||||:|:|:||..:|:.|.
Zfish   344 AQIFFSLGPGFGVLLAFASYNPFHNNCYKDALITSSVNCLTSFLSGFVIFTVLGYMAEMRQQGVE 408

  Fly   393 DVAA-SGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRK 456
            .||. :||.|.|::|..|:..:|.:..::.:||.|::::||||.|..:||.|||::||:|.||.:
Zfish   409 TVAKDAGPSLLFIIYAEAIANMPAATFFAIIFFLMIIMLGLDSTFAGLEGVITAMLDEFPHLLAR 473

  Fly   457 RKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDG 521
            |:|.|:..:..:.||..|:.:|.||.::.::.:.|| :|..::.::|.|.:::||.||..||.:.
Zfish   474 RREWFVLGLVCVCYLGALSTLTYGGAFVVKLFEEYA-TGPAVITVVFLEVIAVSWFYGTTRFCND 537

  Fly   522 IKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQW----TPVKYLDYSYPWWAHAFGWFTALSS 582
            ::.|:|:.|.::|:.||.    |||.....|.||.:    ..||..||.||:|....|:...:||
Zfish   538 VQLMLGFAPGLFWRVCWI----AICPCFLLFIIVSFLAFPPEVKLFDYLYPFWTTVLGYCIGVSS 598

  Fly   583 MLYIPLYMFWLWKRTPGELSEKI 605
            .:.:|.||.:....|.|...:::
Zfish   599 FICVPSYMVYHLVTTKGTFQQRL 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 239/556 (43%)
slc6a4aNP_001035061.1 SLC5-6-like_sbd 91..628 CDD:294310 239/556 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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