DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and si:ch211-132b12.2

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001038688.1 Gene:si:ch211-132b12.2 / 571877 ZFINID:ZDB-GENE-050420-178 Length:582 Species:Danio rerio


Alignment Length:541 Identity:255/541 - (47%)
Similarity:366/541 - (67%) Gaps:28/541 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 QLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELAL 118
            |:.:||:|.||.:|||:|.|:.|||||||||||||||||||||::||::.:...|:|:|.:|.|:
Zfish     7 QIEERGNWGSKTEFILAVAGIVIGLGNVWRFPYLCYKNGGGAFLVPYLVFVVTCGVPLFLLETAM 71

  Fly   119 GQMLTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWW 182
            ||....||:..: ::.|:.:|||||..::..:..:|||:|||||:||...|..:.:||.:|:|.|
Zfish    72 GQYTQEGGITCWHRLCPLAEGIGYAGQLIVLYSCMYYIIILAWALFYLAFSFSSQLPWASCDNIW 136

  Fly   183 NTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITS---LELTDPVKEFWERRALQISHGIEE 244
            ||..||:..|.|                     ||:::   |..|..|.|||:.|.|.:|.|||:
Zfish   137 NTDACVNLAENK---------------------LNLSTPMLLNSTSSVTEFWQHRVLALSGGIEK 180

  Fly   245 IGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFY 309
            :|.|.||:...|:::||:||||:|||||.|||||||||.||||:|.:||:||:||||||:|:.||
Zfish   181 VGKINWEILLCLIVMWIICYFCVWKGVKSTGKVVYFTATFPYVMLLVLLIRGLTLPGALQGVVFY 245

  Fly   310 IIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGF 374
            :.|..::|.:.:||::|..||||||.||..:|..||||||:..|.|:.:|.:|.:|||||:.|||
Zfish   246 LYPEPARLADPQVWMEAGAQIFFSYALGTASLTVLGSYNKYNYNCYRSSLWLCLLNSSTSVIAGF 310

  Fly   375 VIFSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTM 439
            .:|||:||||.:|..|:.:||.|||||||:.||.||..:|...:|:..||.|::|:|||:||..|
Zfish   311 AVFSVLGFMAQKQGLPIEEVAESGPGLAFIAYPQAVAMMPFPQLWAACFFIMIILLGLDTQFVAM 375

  Fly   440 EGFITAIIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLI 502
            |.|:|::||.:|.:|||  |:|||:.:.|...:...|..:|:||||:||:.|.||.||.|||:|.
Zfish   376 EVFMTSVIDLFPTVLRKAGRREIFLLLFCLFCFFGQLVMVTEGGMYVFQLFDYYACSGACLLFLC 440

  Fly   503 FFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLD-YS 566
            .||.:::.|.:|.::.:..|:||....|..|:..||...||.:.|..|..::|::.|:.:.. |.
Zfish   441 VFESLAMGWVFGAEKMFGIIEDMTNSRPNYWFMLCWKYLTPIVSLASFVCSLVKYKPLTFNRWYV 505

  Fly   567 YPWWAHAFGWFTALSSMLYIP 587
            ||.||:..||..||||:|.:|
Zfish   506 YPDWAYVLGWLLALSSILLVP 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 254/537 (47%)
si:ch211-132b12.2NP_001038688.1 SLC6sbd-TauT-like 11..550 CDD:271387 254/537 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.820

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