DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and Slc6a8

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_059044.1 Gene:Slc6a8 / 50690 RGDID:619711 Length:635 Species:Rattus norvegicus


Alignment Length:562 Identity:288/562 - (51%)
Similarity:392/562 - (69%) Gaps:20/562 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 LPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALG 119
            :|.|.:|:.:||||:|.||.|:||||||||||||||||||.|::||::...:.|||:||:|::||
  Rat    49 VPPRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIALVGGIPIFFLEISLG 113

  Fly   120 QMLTIGGLGVFKIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNT 184
            |.:..|.:.|:.|.|:|||:|||:.|:..:.|.|||::|||..:|...|....:||.||.:.|||
  Rat   114 QFMKAGSINVWNICPLFKGLGYASMVIVFYCNTYYIMVLAWGFYYLVKSFTTTLPWATCGHTWNT 178

  Fly   185 VNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTD---PVKEFWERRALQISHGIEEIG 246
            .:||..:..::  |            .:.|..|:|..:|.|   ||.||||.:.|::|.|:|..|
  Rat   179 PDCVEIFRHED--C------------ANASLANLTCDQLADRRSPVIEFWENKVLRLSTGLEVPG 229

  Fly   247 NIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYII 311
            .:.||:...||..|:|.|||:|||||.|||:|||||.||||:|.:|||||:.|||||:||.:|:.
  Rat   230 ALNWEVTLCLLACWVLVYFCVWKGVKSTGKIVYFTATFPYVVLVVLLVRGVLLPGALDGIIYYLK 294

  Fly   312 PNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVI 376
            |::|||.:.:|||||.|||||||.:|||.|.||||||:|.||.||||:|:..:||.||.|||||:
  Rat   295 PDWSKLGSPQVWIDAGTQIFFSYAIGLGALTALGSYNRFNNNCYKDAIILALINSGTSFFAGFVV 359

  Fly   377 FSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEG 441
            ||::||||.||...::.||.|||||||:.||.||..:|.:|:|:.||||||||:||||||..:||
  Rat   360 FSILGFMATEQGVHISKVAESGPGLAFIAYPRAVTLMPVAPLWAALFFFMLLLLGLDSQFVGVEG 424

  Fly   442 FITAIIDEWP--QLLRKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFF 504
            |||.::|..|  ...|.::||.:|:.|||.:::.|:.:|.||||:||:.|.|:.||..|||..|:
  Rat   425 FITGLLDLLPASYYFRFQREISVALCCALCFVIDLSMVTDGGMYVFQLFDYYSASGTTLLWQAFW 489

  Fly   505 ECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLD-YSYP 568
            |||.::|.||.|||.|.|..||||.|..|.|:||...||.:|:|:|.||:|.:.|:.|.: |.||
  Rat   490 ECVVVAWVYGADRFMDDIACMIGYRPCPWMKWCWSFFTPLVCMGIFIFNVVYYKPLVYNNTYVYP 554

  Fly   569 WWAHAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIRALVR 610
            ||..|.||..||||||.:||::.....|..|.::|:.:.|.:
  Rat   555 WWGEAMGWAFALSSMLCVPLHLLGCLLRAKGTMAERWQHLTQ 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 287/559 (51%)
Slc6a8NP_059044.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..47
SLC6sbd_CT1 52..621 CDD:271397 287/559 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.920

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