DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and Slc6a12

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_059031.1 Gene:Slc6a12 / 50676 RGDID:620255 Length:628 Species:Rattus norvegicus


Alignment Length:564 Identity:298/564 - (52%)
Similarity:396/564 - (70%) Gaps:22/564 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 EQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELA 117
            :|:.|||.|::||:|:|||.|..|||||||||||||||||||||.:||.|..|..|||:||:|:|
  Rat    45 DQVKDRGQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYFIFFFSCGIPVFFLEVA 109

  Fly   118 LGQMLTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNW 181
            |||..:.|.:..: ||.|:.:|||.|:.|:..::|:|||:|||||:||.|.|...::||.||.|.
  Rat   110 LGQYSSQGSVTAWRKICPLLQGIGMASVVIESYLNIYYIIILAWALFYLFSSFTWELPWTTCTNS 174

  Fly   182 WNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIG 246
            |||.:||.            .:|.::.:..|.|. |.||     ||.||||||.|.|:.||.::|
  Rat   175 WNTEHCVD------------FLNYSSTRAASYSE-NFTS-----PVMEFWERRVLGITSGIHDLG 221

  Fly   247 NIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYII 311
            ::|||||..|||.||:||||||||||.|||||||||.|||::|.|||:||:|||||.:||.||:.
  Rat   222 SLRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLIILLIRGVTLPGAYQGIVFYLK 286

  Fly   312 PNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVI 376
            |:..:|.:.:||:||.||||||:.:..|.|.|||||||:.||.|:|::.:|.:||:||..||||:
  Rat   287 PDLLRLKDPQVWMDAGTQIFFSFAICQGCLTALGSYNKYHNNCYRDSIALCFLNSATSFVAGFVV 351

  Fly   377 FSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEG 441
            ||::||||.||..|:::||.|||||||:.:|.||..:|.|.:||||||.|||.:||||||..||.
  Rat   352 FSILGFMAQEQGVPISEVAESGPGLAFIAFPKAVTMMPLSQLWSCLFFLMLLFLGLDSQFVCMEC 416

  Fly   442 FITAIIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFF 504
            .:||.:|.:||.|||  |:|:.|..|..:.||:||..:|:|||||||:.|.||.||.|||:|..|
  Rat   417 LVTASMDMFPQQLRKRGRRELLILAVAIVCYLMGLLLVTEGGMYIFQLFDYYASSGICLLFLSLF 481

  Fly   505 ECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLD-YSYP 568
            |.:.|.|.||.|||||.::|||||.|....|..|...||.:||..|||::.::||:||.: |.||
  Rat   482 EVICIGWVYGADRFYDNVEDMIGYRPWPLVKISWLFLTPGLCLATFFFSLSKYTPLKYNNVYIYP 546

  Fly   569 WWAHAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIRALVRID 612
            .|.::.||..|.|||..:||::.....:|.|...::::.|:..|
  Rat   547 SWGYSIGWLLAFSSMACVPLFIIITLLKTQGSFKKRLQRLITPD 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 295/556 (53%)
Slc6a12NP_059031.1 SLC5-6-like_sbd 49..589 CDD:294310 296/557 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.820

Return to query results.
Submit another query.