DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and slc6a1b

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001007363.1 Gene:slc6a1b / 492490 ZFINID:ZDB-GENE-041114-57 Length:600 Species:Danio rerio


Alignment Length:596 Identity:339/596 - (56%)
Similarity:436/596 - (73%) Gaps:28/596 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 GHTTSLQSSSPTTTDTSNKQQLVKIE---QLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCY 89
            ||..:..:.:||..| ..|..:||::   :||||.:|..|.||:||.||.||||||||||||||.
Zfish    11 GHVLTEVNEAPTAND-KPKTLVVKVQKKKELPDRETWQGKFDFLLSCVGYAIGLGNVWRFPYLCG 74

  Fly    90 KNGGGAFILPYIITLFLAGIPMFFMELALGQMLTIGGLGVFKIAPIFKGIGYAAAVMSCWMNVYY 154
            |||||||::||.:||..||:|:||:|.||||..:||||||:|:||:|||:|.||||:|.|:|:||
Zfish    75 KNGGGAFLIPYFLTLIFAGVPLFFLETALGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYY 139

  Fly   155 IVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNIT 219
            |||:|||::|.:.|...|:||::|:|.|||..|.|.|...|:.                      
Zfish   140 IVIIAWAIYYLYNSFTTDLPWKSCDNPWNTDKCFSNYSMANIG---------------------- 182

  Fly   220 SLELTDPVKEFWERRALQISHGIEEIGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALF 284
              .:|..|.|||||...|::.|:|:.|.||..||.||.:.|:|.||||||||.||||||||:|.:
Zfish   183 --NMTSAVVEFWERNMHQLTDGLEKPGEIRLPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATY 245

  Fly   285 PYVLLTILLVRGITLPGALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNK 349
            ||.:|.||.:||:|||||.|||.||:.|.||||..||||:||.||||||||||||:|:||||||.
Zfish   246 PYFMLFILFIRGVTLPGAKEGILFYVTPEFSKLKESEVWLDAATQIFFSYGLGLGSLIALGSYNP 310

  Fly   350 FTNNVYKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLP 414
            |.||||||::|||.:||.|||||||||||::|||||..:||:|||||||||||||.||.||.|||
Zfish   311 FNNNVYKDSIIVCCINSFTSMFAGFVIFSIVGFMAHITKRPIADVAASGPGLAFLAYPEAVTQLP 375

  Fly   415 GSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRKRKEIFIAIVCALSYLVGLTCITQ 479
            .||:|:.|||.|||::|:||||||:||||||::||:|:.||.|:|||||:||.:|||:||:.|||
Zfish   376 ISPLWAVLFFSMLLMLGIDSQFCTVEGFITALVDEFPRALRGRREIFIAVVCLVSYLIGLSNITQ 440

  Fly   480 GGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPA 544
            ||:|:|::.|.|:.||.|||:|:|||||||||.|||::||..:::||||.|.:|||.||.|.||.
Zfish   441 GGLYVFKLFDYYSASGMCLLFLVFFECVSISWFYGVNKFYGNLEEMIGYKPCIWWKLCWVVFTPL 505

  Fly   545 ICLGVFFFNIVQWTPVKYLDYSYPWWAHAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIRALV 609
            |..|||.|:.||..|:...:|.:|.|....||..|||||:.||.||.:::....|...|::|.::
Zfish   506 IVAGVFLFSAVQMVPLTLNNYVFPKWGQGVGWCMALSSMVLIPGYMGYMFLTLKGSYKERLRIMI 570

  Fly   610 RIDEDVTRLRE 620
            :......|.:|
Zfish   571 QPTAAAVRTQE 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 326/552 (59%)
slc6a1bNP_001007363.1 SLC5-6-like_sbd 2..600 CDD:294310 339/596 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 713 1.000 Domainoid score I113
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2290
Inparanoid 1 1.050 730 1.000 Inparanoid score I600
OMA 1 1.010 - - QHG49243
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 1 1.000 - - otm25299
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3258
SonicParanoid 1 1.000 - - X3352
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.870

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