DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and SerT

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001369117.1 Gene:SerT / 37895 FlyBaseID:FBgn0010414 Length:768 Species:Drosophila melanogaster


Alignment Length:593 Identity:249/593 - (41%)
Similarity:368/593 - (62%) Gaps:47/593 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NSASDGDGGGDVCKHESIEMSKELGHTTSLQSSSPTTTDTSNKQQLVKIEQLP-DRGSWSSKMDF 67
            ::..|||                  |||..:.:.|.....:|.::::.:.... .|.:|..|.:|
  Fly    37 SNEDDGD------------------HTTPAKVTDPLAPKLANNERILVVSVTERTRETWGQKAEF 83

  Fly    68 ILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQMLTIGGLGVFK- 131
            :|:|:|.|:.|||||||||:||:||||||::||.:.|...|:|:|:|||||||....|.|.::| 
  Fly    84 LLAVIGFAVDLGNVWRFPYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKR 148

  Fly   132 IAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNL 196
            |.|..||:|||..::..:|.:||..|:.|||:|.|.|..:.:||.:|:|.|||.||:        
  Fly   149 ICPALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWNTENCM-------- 205

  Fly   197 HCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQI--SHGIEEIGNIRWELAGTLLLV 259
                           .|::.|.|.| .|.|.|||:||:.|:.  .:|::.:|.::..||..:..|
  Fly   206 ---------------QVTSENFTEL-ATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALCVFGV 254

  Fly   260 WILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNFSKLTNSEVWI 324
            ::|.||.:||||:..||||:.|||.|||:|.||||||::||||.||||:|:.|.:.||.||:|||
  Fly   255 FVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEGIKYYLTPEWHKLKNSKVWI 319

  Fly   325 DAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQQR 389
            ||.:|||||.|.|.|||:||.|||||.||.|:||||..::|..||..||||||||:|:||:.|:.
  Fly   320 DAASQIFFSLGPGFGTLLALSSYNKFNNNCYRDALITSSINCLTSFLAGFVIFSVLGYMAYVQKT 384

  Fly   390 PVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLL 454
            .:..|...||||.|:|||.|:..:.||..||.:||.||:.:||||.|..:|..|||:.||:|:::
  Fly   385 SIDKVGLEGPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVI 449

  Fly   455 RKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFY 519
            .:|:|:|:.::.|..:|..|..:|.||:.:...|:.|. .|..:|:::|.|...:.|.||||||.
  Fly   450 GRRRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVYG-PGLAILFVVFVEAAGVFWFYGVDRFS 513

  Fly   520 DGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLDYSYPWWAHAFGWFTALSSML 584
            ..::.|:|..|.::|:.||...:|...|.:|.|:|:.:..:...:|.||.|::..||....||:|
  Fly   514 SDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMGYKEMLGEEYYYPDWSYQVGWAVTCSSVL 578

  Fly   585 YIPLYMFW 592
            .||:|:.:
  Fly   579 CIPMYIIY 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 241/538 (45%)
SerTNP_001369117.1 SLC6sbd_SERT-like 74..607 CDD:271388 241/538 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440715
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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