DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and Slc6a16

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_038949993.1 Gene:Slc6a16 / 292902 RGDID:1561338 Length:850 Species:Rattus norvegicus


Alignment Length:658 Identity:155/658 - (23%)
Similarity:276/658 - (41%) Gaps:136/658 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 SLQSSSPTTT----DTSNKQQL-VKIEQLPDRGS--------WSSKMDFILSVVGLAIGLGNVWR 83
            :||.:.|:||    :|:.||:. :::.:.....|        ||||.::||:::|..:....:.|
  Rat   193 ALQFNKPSTTEYSMETTPKQESPIELNKTSKENSNVFPPWLLWSSKAEYILALMGYLVMPSGLLR 257

  Fly    84 FPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQMLTIGGLGVFK-IAPIFKGIGYAAAVMS 147
            |.......|..:|.:.|::.||..|||:.|:|:|:||......:.::| ::|.|.|:||:..::.
  Rat   258 FVTCWVHKGSWSFFIAYLLMLFGLGIPLLFLEMAVGQRAQQSSIDLWKTLSPWFGGLGYSMVMVC 322

  Fly   148 CWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCS 212
            ...|.|..|..:|.:||........|||..|....|:.:...:.|:...:.:             
  Rat   323 LITNTYLNVFNSWILFYMSHIFHFVVPWDRCPLQKNSSDFDPECEQATSYTY------------- 374

  Fly   213 VSALNITSLELTDPVKEFWERRALQISHGIEEIGNIRWELAGTLLLVW-ILCYFCIWKGVKWTGK 276
                             ||.|:.|:.|..||:.|...:.||..|.|.| ::|.|.: .|:|..||
  Rat   375 -----------------FWYRQTLKASDSIEDGGQPSFNLAMFLFLAWCLICVFMV-NGIKSLGK 421

  Fly   277 VVYFTALFPYVLLTILLVRGITLPGAL-EGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGT 340
            |:......||.::...|||.:::...: .|:.:.:|...:::::..:|..|..|:.|..|||.|.
  Rat   422 VLCVLLQVPYFIIICFLVRTLSMGNGIGYGLNYLLILEVARISDLTMWCQAGIQVLFDIGLGFGP 486

  Fly   341 LVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVIGFMA--------------------- 384
            :::|.|:....||..|||.::......|.:.......|::||.|                     
  Rat   487 VISLSSHMSDFNNCLKDAFLMGLFKIVTLLITTPFFLSILGFWATITTHHCCKKNTNKLLMLIAQ 551

  Fly   385 ------------------------HEQQRPVADVAAS----------------GPGLAFLVYPSA 409
                                    :....|:.....|                .|...||::...
  Rat   552 GILPPEVEPPDLNDDPISIYNSWLNSLPPPLRSAVLSMVPECNIQKQFMRIEDSPRFLFLIFTEV 616

  Fly   410 VLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRKRKEIFIAIVCALSYLVGL 474
            :..||||..|:.|||..||.:||.:....|.|.|..:.|.:| ..|::..:....|...::|.||
  Rat   617 ISLLPGSAFWTVLFFLALLGLGLCTNLMYMLGNILTLQDTFP-FCRRQPRLLTVGVSMTTFLCGL 680

  Fly   475 TCITQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIG-----YYPTVWW 534
            ..|...|:|.|.:|..|.|: ..::.:|..|.::::|.||..||   :.||:.     .:|...|
  Rat   681 IFIQPSGIYYFSLLSEYWVA-VPIITIILCETLAVAWAYGAKRF---LADMMALLSRPIFPGCSW 741

  Fly   535 KFCWCVTTPAICLGVFFF---NIVQWTPVKYLDYS----------YPWWAHAFGWFTALSSMLYI 586
              .|...:|.:.||:..|   .:|| .|:.|:.:.          :|.|:...  ...||:::.:
  Rat   742 --LWRYVSPVVLLGLLLFICIYLVQ-GPLVYMAWDSSTSKEVVRYFPMWSLML--IAGLSAVVLM 801

  Fly   587 PLYMFWLW 594
            |:..::.:
  Rat   802 PIPAYFAY 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 147/627 (23%)
Slc6a16XP_038949993.1 SLC6sbd_NTT5 232..802 CDD:271392 145/610 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.