DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and mod-5

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_491095.3 Gene:mod-5 / 171879 WormBaseID:WBGene00003387 Length:671 Species:Caenorhabditis elegans


Alignment Length:565 Identity:217/565 - (38%)
Similarity:340/565 - (60%) Gaps:46/565 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQML 122
            |..|::||:|:|:|||.|:.|||:||||.:|||:|||||::||.|.|.:.|:|||:|||.|||..
 Worm   100 RDKWATKMEFLLAVVGYAVDLGNIWRFPSVCYKHGGGAFLIPYFIMLMIGGLPMFYMELVLGQFH 164

  Fly   123 TIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMR----ADVPWRTCNNWW 182
            ..|.:.:: |:.|:|:||||....:..::.::|..|:|.||::..:|:.    ::|||.:|.|.|
 Worm   165 RSGCVSIWRKVCPLFRGIGYGICCICTFIAIFYNAIIAQAVYFAIVSLSKIWDSEVPWASCGNPW 229

  Fly   183 NTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNIT----SLELTDPVKEFWERRALQI--SHG 241
            ||..|...                         ||:|    ...||.|.:|::..:.|::  |.|
 Worm   230 NTPRCSDD-------------------------LNVTISRNGTPLTTPSEEYYLYKVLEVQKSTG 269

  Fly   242 IEEIGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGI 306
            .:::|.::..:|..||.|:|:.||.:|||.:.:||:|:.||..||::|:|||:||:.||||..|:
 Worm   270 FDDLGGVKTSMAVCLLAVFIMVYFALWKGPQSSGKIVWVTATAPYIILSILLIRGLLLPGAKNGL 334

  Fly   307 KFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMF 371
            .:|:.|:|.||.:..||..|.||||||.|.|.|.|:||.|||.|.||.|:||:....:|.:||.|
 Worm   335 YYYVTPDFEKLKDPAVWSAAATQIFFSLGPGFGVLLALSSYNDFNNNCYRDAVTTSIINCATSFF 399

  Fly   372 AGFVIFSVIGFMAHEQQRPVADVAAS-GPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQ 435
            :|.|:||.:|:|:....:|:.:|... ...|.|:|||.|:..:..|..||.:||.||:.:|:||.
 Worm   400 SGCVVFSTLGYMSLLTNKPINEVVGEHDASLIFIVYPQALATMDYSCFWSFIFFVMLITLGIDST 464

  Fly   436 FCTMEGFITAIIDEWPQLLRKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLW 500
            |..:|.|||...|| .:.|.|.::.|:.::|.:.|.:....|:.||.::...||.|.|| ..:|:
 Worm   465 FAGIEAFITGFCDE-SRFLSKNRKWFVLVICIIYYFLSFPAISYGGQFVIPFLDEYGVS-LSVLF 527

  Fly   501 LIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIV---QWTPVKY 562
            ::..|.:::.|.||||:|...|:.|:|:||.::|:.||  |...:.:.|.|...|   .:.|::.
 Worm   528 IVTCEMIAVCWFYGVDQFSKDIRAMLGFYPGIYWRVCW--TCSPVFISVIFIMTVYNSSFKPIQM 590

  Fly   563 LDYSYPWWAHAFGWFTALSSMLYIPLY-MFWLWKRTPGELSEKIR 606
            ..|::|||:...|||..|.|:|.||:: :.:|...| |.|.|:.|
 Worm   591 ASYTFPWWSVILGWFLRLLSVLAIPVFAIIYLLSGT-GTLYERFR 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 217/565 (38%)
mod-5NP_491095.3 SLC6sbd_SERT-like 100..639 CDD:271388 217/565 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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