DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and Slc6a13

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_006237280.2 Gene:Slc6a13 / 171163 RGDID:620788 Length:608 Species:Rattus norvegicus


Alignment Length:594 Identity:309/594 - (52%)
Similarity:420/594 - (70%) Gaps:34/594 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 SPTTTDTSNKQQLVKIEQLPDRGS-----WSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAF 96
            |.||::...|.....:|::.:.|:     |::||:|:|||.|..|||||||||||||||||||||
  Rat     6 SGTTSNGETKPVCPVMEKVEEDGTLEREQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAF 70

  Fly    97 ILPYIITLFLAGIPMFFMELALGQMLTIGGLGVF-KIAPIFK------GIGYAAAVMSCWMNVYY 154
            .:||:|.||..|||:||:|.||||....||:..: ||.|||:      |||||:.::...:||||
  Rat    71 FIPYLIFLFTCGIPVFFLETALGQYTNQGGITAWRKICPIFEASVPSPGIGYASQMIVSLLNVYY 135

  Fly   155 IVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNIT 219
            ||:||||:||.|.|...|:||.:|::.|||.||| ::::.|                  ::||:|
  Rat   136 IVVLAWALFYLFSSFTTDLPWGSCSHEWNTENCV-EFQKTN------------------NSLNVT 181

  Fly   220 SLELTDPVKEFWERRALQISHGIEEIGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALF 284
            |...|.||.||||||.|:||.||:.:|::||||...|||.||:||||||||||.|||||||||.|
  Rat   182 SENATSPVIEFWERRVLKISDGIQHLGSLRWELVLCLLLAWIICYFCIWKGVKSTGKVVYFTATF 246

  Fly   285 PYVLLTILLVRGITLPGALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNK 349
            ||::|.:||:||:|||||.:||:||:.||.::|.:.:||:||.||||||:.:.||.|.|||||||
  Rat   247 PYLMLVVLLIRGVTLPGAAQGIQFYLYPNITRLWDPQVWMDAGTQIFFSFAICLGCLTALGSYNK 311

  Fly   350 FTNNVYKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLP 414
            :.||.|:|.:.:|.:|||||..|||.|||::|||:.||..|:::||.|||||||:.||.||:.||
  Rat   312 YHNNCYRDCVALCILNSSTSFVAGFAIFSILGFMSQEQGVPISEVAESGPGLAFIAYPRAVVMLP 376

  Fly   415 GSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCI 477
            .||:|:|.||||::|:||||||..:|..:||::|.:|::.||  |:||.|.||..:|:.:||..:
  Rat   377 FSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPRVFRKKNRREILILIVSVVSFFIGLIML 441

  Fly   478 TQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTT 542
            |:||||:||:.|.||.||.|||::..||.:.::|.||..||||.|:|||||.|....|:||...|
  Rat   442 TEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGASRFYDNIEDMIGYKPWPLIKYCWLFFT 506

  Fly   543 PAICLGVFFFNIVQWTPVKY-LDYSYPWWAHAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIR 606
            ||:||..|.|:::::||:.| ..|:||||..|.||..|||||:.||.:..:..:...|.|.|::|
  Rat   507 PAVCLATFLFSLIKYTPLTYNKKYTYPWWGDALGWLLALSSMVCIPAWSIYKLRTLKGPLRERLR 571

  Fly   607 ALVRIDEDV 615
            .||...||:
  Rat   572 QLVCPAEDL 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 302/567 (53%)
Slc6a13XP_006237280.2 SLC5-6-like_sbd 32..581 CDD:382020 303/568 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

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