DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and Slc6a12

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001368835.1 Gene:Slc6a12 / 14411 MGIID:95628 Length:628 Species:Mus musculus


Alignment Length:565 Identity:298/565 - (52%)
Similarity:397/565 - (70%) Gaps:24/565 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 EQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELA 117
            :|:.|||.|::||:|:|||.|..|||||||||||||||||||||.:||.|..|..|||:||:|:|
Mouse    45 DQVKDRGQWTNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYFIFFFSCGIPVFFLEVA 109

  Fly   118 LGQMLTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNW 181
            |||..:.|.:..: ||.|:.:|||.|:.|:..::|:|||:|||||:||.|.|...::||.||.|.
Mouse   110 LGQYSSQGSVTAWRKICPLLQGIGMASVVIESYLNIYYIIILAWALFYLFSSFTWELPWTTCTNS 174

  Fly   182 WNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLE-LTDPVKEFWERRALQISHGIEEI 245
            |||.:||.            .:|.:       ||..::|.| .|.||.||||||.|.|:.||.::
Mouse   175 WNTEHCVD------------FLNHS-------SARGVSSSENFTSPVMEFWERRVLGITSGIHDL 220

  Fly   246 GNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYI 310
            |::|||||..|||.||:||||||||||.|||||||||.|||::|.|||:||:|||||.:||.||:
Mouse   221 GSLRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLIILLIRGVTLPGAYQGIVFYL 285

  Fly   311 IPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFV 375
            .|:..:|.:.:||:||.||||||:.:..|.|.|||||||:.||.|:|::.:|.:||:||..||||
Mouse   286 KPDLLRLKDPQVWMDAGTQIFFSFAICQGCLTALGSYNKYHNNCYRDSIALCFLNSATSFVAGFV 350

  Fly   376 IFSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTME 440
            :||::|||:.||..|:::||.|||||||:.:|.||..:|.|.:||||||.|||.:||||||..||
Mouse   351 VFSILGFMSQEQGIPISEVAESGPGLAFIAFPKAVTMMPLSQLWSCLFFIMLLFLGLDSQFVCME 415

  Fly   441 GFITAIIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIF 503
            ..:||.:|.:||.|||  |:|:.|..:..|.||:||..:|:|||||||:.|.||.||.|||:|..
Mouse   416 CLVTASMDMFPQQLRKSGRRELLILAISVLCYLMGLLLVTEGGMYIFQLFDYYASSGICLLFLSL 480

  Fly   504 FECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLD-YSY 567
            ||.:.|.|.||.|||||.::|||||.|....|..|...||.:||..|||::.::||:||.: |.|
Mouse   481 FEVICIGWVYGADRFYDNVEDMIGYRPWPLVKISWLFLTPGLCLATFFFSLSKYTPLKYNNVYMY 545

  Fly   568 PWWAHAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIRALVRID 612
            |.|.::.||..|.|||..:||::...:.:|.|...:::|.|:..|
Mouse   546 PSWGYSIGWLLAFSSMACVPLFIIITFLKTQGSFKKRLRRLITPD 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 295/557 (53%)
Slc6a12NP_001368835.1 SLC5-6-like_sbd 49..589 CDD:382020 296/558 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.820

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