DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and Slc6a9

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_006238687.1 Gene:Slc6a9 / 116509 RGDID:621243 Length:638 Species:Rattus norvegicus


Alignment Length:592 Identity:253/592 - (42%)
Similarity:379/592 - (64%) Gaps:23/592 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TTSLQSSSPTTTDTSNKQQLVKIEQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGG 94
            |:|.:.:....::.:.|.|.:      .||:|.::::|:|:.||.|:|||||||||||||:||||
  Rat    10 TSSPEQNGAVPSEATKKDQNL------TRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGG 68

  Fly    95 AFILPYIITLFLAGIPMFFMELALGQMLTIGGLGVFKIAPIFKGIGYAAAVMSCWMNVYYIVILA 159
            ||:.||.|.|...|||:|||||:.||..:.|.|||::|:|:|||:||...|:|.::.:||.|::.
  Rat    69 AFMFPYFIMLVFCGIPLFFMELSFGQFASQGCLGVWRISPMFKGVGYGMMVVSTYIGIYYNVVIC 133

  Fly   160 WAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCS--VSALNITSLE 222
            .|.:|||.||...:||..|||.|||.:|....:..||      .||:.....|  :|.|...:|:
  Rat   134 IAFYYFFSSMTHVLPWAYCNNPWNTPDCAGVLDASNL------TNGSRPTALSGNLSHLFNYTLQ 192

  Fly   223 LTDPVKEFWERRALQISHGIEEIGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYV 287
            .|.|.:|:|....|::|..|.:.|.:|..|.|.|.:.|::.:.|:.:|||.:||||||||.||||
  Rat   193 RTSPSEEYWRLYVLKLSDDIGDFGEVRLPLLGCLGVSWVVVFLCLIRGVKSSGKVVYFTATFPYV 257

  Fly   288 LLTILLVRGITLPGALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTN 352
            :||||.|||:||.||..||.:|:.|.:.|:..::||.||.:|||:|.|...|.|:.:.|||||.|
  Rat   258 VLTILFVRGVTLEGAFTGIMYYLTPKWDKILEAKVWGDAASQIFYSLGCAWGGLITMASYNKFHN 322

  Fly   353 NVYKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSP 417
            |.|:|::|:...|.:||::|||||||::||||:.....|:.||..||||||:.||.|:..||.||
  Rat   323 NCYRDSVIISITNCATSVYAGFVIFSILGFMANHLGVDVSRVADHGPGLAFVAYPEALTLLPISP 387

  Fly   418 MWSCLFFFMLLLIGLDSQFCTMEGFITAIID----EWPQLLRKRKEIFIAIVCALSYLVGLTCIT 478
            :||.||||||:|:||.:|||.:|..:|||:|    ||  :|:|:..:.:.:..| .:|:|:...:
  Rat   388 LWSLLFFFMLILLGLGTQFCLLETLVTAIVDEVGNEW--ILQKKTYVTLGVAVA-GFLLGIPLTS 449

  Fly   479 QGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTP 543
            |.|:|...::|:||.| |.|:.:....||||.:.||...::..|:.|:|:.|.::::.||...:|
  Rat   450 QAGIYWLLLMDNYAAS-FSLVVISCIMCVSIMYIYGHRNYFQDIQMMLGFPPPLFFQICWRFVSP 513

  Fly   544 AICLGVFFFNIVQWTPVKYLDYSYPWWAHAFGWFTALSSMLYIPLYMFWLWKRTPGE-LSEKIRA 607
            .|...:..|.::|:.|:.|..|.||.||.|.|:..||||::.||||..:...||.|: |.::::.
  Rat   514 TIIFFILIFTVIQYRPITYNHYQYPGWAVAIGFLMALSSVICIPLYALFQLCRTDGDTLLQRLKN 578

  Fly   608 LVRIDED 614
            ..:...|
  Rat   579 ATKPSRD 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 248/559 (44%)
Slc6a9XP_006238687.1 SLC6sbd_GlyT1 16..599 CDD:212067 251/586 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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