DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and Slc6a20a

DIOPT Version :10

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_579830.2 Gene:Slc6a20a / 113918 RGDID:621651 Length:616 Species:Rattus norvegicus


Alignment Length:600 Identity:203/600 - (33%)
Similarity:295/600 - (49%) Gaps:101/600 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQML 122
            |..|.:.:.|:.:.:..|:||||||||||||...|||:|::||:|.|.:.|:|:.::|||:||.:
  Rat    29 RPQWGNPLQFVFACISYAVGLGNVWRFPYLCQMYGGGSFLVPYLIMLIVEGMPLLYLELAVGQRM 93

  Fly   123 TIGGLGVFK-IAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVN 186
            ..|.:|.:: |:|...|:|.|:.|:|.::::||.||.||..:|.|.|.:..:||..|     .:|
  Rat    94 RQGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWGFWYLFHSFQDPLPWSVC-----PLN 153

  Fly   187 CVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGNIRWE 251
                   .|...:|:                  ..|.....:.||.|:.|.||..|:|.|.::||
  Rat   154 -------SNRTGYDE------------------ECEKASSTQYFWYRKTLNISPSIQENGGVQWE 193

  Fly   252 LAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNFSK 316
            .|..|.|.|::.|.||.:|.:.||||||||||.||.:|.|.||||:||.||..|:.:...|...:
  Rat   194 PALCLTLAWLMVYLCILRGTESTGKVVYFTALMPYCVLIIYLVRGLTLHGATNGLMYMFTPKMEQ 258

  Fly   317 LTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVIG 381
            |.|.:.||:|.||||||.|||.|:|:|..|||:.:|:..|.|:||..:|||||:||..|.||:.|
  Rat   259 LANPKAWINAATQIFFSLGLGFGSLIAFASYNEPSNDCQKHAVIVSVINSSTSIFASIVTFSIYG 323

  Fly   382 FMA---------------------------HEQQRPVADVAAS---------------------- 397
            |.|                           ......|.|..||                      
  Rat   324 FKATFNYENCLNKVILLLTNSFDLEDGFLTASNLEEVKDYLASTYPNKYSEVFPHIRNCSLESEL 388

  Fly   398 -----GPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRKR 457
                 |.||||:||..|:..:..|.:||.|:|||||::|:.|........:|.:.|.........
  Rat   389 NTAVQGTGLAFIVYTEAIKNMEVSQLWSVLYFFMLLMLGMGSMLGNTAAILTPLTDSKVISSYLP 453

  Fly   458 KEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGI 522
            ||....:||.::..||:....:.|.|.|.|.:.||.: ..||.::..|.:::.:.||:.||...:
  Rat   454 KEAISGLVCLINCAVGMVFTMEAGNYWFDIFNDYAAT-LSLLLIVLVETIAVCYVYGLRRFESDL 517

  Fly   523 KDMIGYYPTVW-WKFCWCVTTPAICLGVFFFNIVQWTPVKYLDY-------------SYPWWAHA 573
            :.|.| .|..| ||..|...:|.:.:|:|.|.:..:.....|.|             .||..|.|
  Rat   518 RAMTG-RPLNWYWKAMWAFVSPLLIIGLFIFYLSDYILTGTLQYQAWDATQGQLVTKDYPPHALA 581

  Fly   574 FGWFTALSSMLYIPL 588
            .......||.:.|||
  Rat   582 VIGLLVASSTMCIPL 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 202/599 (34%)
Slc6a20aNP_579830.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
SLC5-6-like_sbd 26..601 CDD:444915 202/599 (34%)
Blue background indicates that the domain is not in the aligned region.

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