DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and Slc6a20

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_579830.1 Gene:Slc6a20 / 113918 RGDID:621651 Length:616 Species:Rattus norvegicus


Alignment Length:600 Identity:203/600 - (33%)
Similarity:295/600 - (49%) Gaps:101/600 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQML 122
            |..|.:.:.|:.:.:..|:||||||||||||...|||:|::||:|.|.:.|:|:.::|||:||.:
  Rat    29 RPQWGNPLQFVFACISYAVGLGNVWRFPYLCQMYGGGSFLVPYLIMLIVEGMPLLYLELAVGQRM 93

  Fly   123 TIGGLGVFK-IAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVN 186
            ..|.:|.:: |:|...|:|.|:.|:|.::::||.||.||..:|.|.|.:..:||..|     .:|
  Rat    94 RQGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWGFWYLFHSFQDPLPWSVC-----PLN 153

  Fly   187 CVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGNIRWE 251
                   .|...:|:                  ..|.....:.||.|:.|.||..|:|.|.::||
  Rat   154 -------SNRTGYDE------------------ECEKASSTQYFWYRKTLNISPSIQENGGVQWE 193

  Fly   252 LAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNFSK 316
            .|..|.|.|::.|.||.:|.:.||||||||||.||.:|.|.||||:||.||..|:.:...|...:
  Rat   194 PALCLTLAWLMVYLCILRGTESTGKVVYFTALMPYCVLIIYLVRGLTLHGATNGLMYMFTPKIEQ 258

  Fly   317 LTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVIG 381
            |.|.:.||:|.||||||.|||.|:|:|..|||:.:|:..|.|:||..:|||||:||..|.||:.|
  Rat   259 LANPKAWINAATQIFFSLGLGFGSLIAFASYNEPSNDCQKHAVIVSVINSSTSIFASIVTFSIYG 323

  Fly   382 FMA---------------------------HEQQRPVADVAAS---------------------- 397
            |.|                           ......|.|..||                      
  Rat   324 FKATFNYENCLNKVILLLTNSFDLEDGFLTASNLEEVKDYLASTYPNKYSEVFPHIRNCSLESEL 388

  Fly   398 -----GPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRKR 457
                 |.||||:||..|:..:..|.:||.|:|||||::|:.|........:|.:.|.........
  Rat   389 NTAVQGTGLAFIVYAEAIKNMEVSQLWSVLYFFMLLMLGMGSMLGNTAAILTPLTDSKVISSYLP 453

  Fly   458 KEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGI 522
            ||....:||.::..||:....:.|.|.|.|.:.||.: ..||.::..|.:::.:.||:.||...:
  Rat   454 KEAISGLVCLINCAVGMVFTMEAGNYWFDIFNDYAAT-LSLLLIVLVETIAVCYVYGLRRFESDL 517

  Fly   523 KDMIGYYPTVW-WKFCWCVTTPAICLGVFFFNIVQWTPVKYLDY-------------SYPWWAHA 573
            :.|.| .|..| ||..|...:|.:.:|:|.|.:..:.....|.|             .||..|.|
  Rat   518 RAMTG-RPLNWYWKAMWAFVSPLLIIGLFIFYLSDYILTGTLQYQAWDATQGQLVTKDYPPHALA 581

  Fly   574 FGWFTALSSMLYIPL 588
            .......||.:.|||
  Rat   582 VIGLLVASSTMCIPL 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 202/599 (34%)
Slc6a20NP_579830.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
SLC5-6-like_sbd 26..601 CDD:294310 202/599 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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