DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and Slc6a20a

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_631881.1 Gene:Slc6a20a / 102680 MGIID:2143217 Length:592 Species:Mus musculus


Alignment Length:599 Identity:202/599 - (33%)
Similarity:295/599 - (49%) Gaps:99/599 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 RGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQML 122
            |..|...:.|:.:.:..|:||||||||||||...|||:|::||||.|.:.|:|:.::|||:||.:
Mouse     5 RPQWGHPLQFVFACISYAVGLGNVWRFPYLCQMYGGGSFLVPYIIMLIVEGMPLLYLELAVGQRM 69

  Fly   123 TIGGLGVFK-IAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVN 186
            ..|.:|.:: |:|...|:|.|:.|:|.::::||.||.||..:|.|.|.:..:||..|     .:|
Mouse    70 RQGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWGFWYLFHSFQDPLPWSVC-----PLN 129

  Fly   187 CVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGNIRWE 251
              |.:...:..|                       |.....:.||.|:.|.||..|:|.|.::||
Mouse   130 --SNHTGYDEEC-----------------------EKASSTQYFWYRKTLNISPSIQENGGVQWE 169

  Fly   252 LAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNFSK 316
            .|..|.|.|::.|.||.:|.:.|||||||||..||.:|.|.||||:||.||..|:.:...|...:
Mouse   170 PALCLTLAWLMVYLCILRGTESTGKVVYFTASMPYCVLIIYLVRGLTLHGATNGLMYMFTPKMEQ 234

  Fly   317 LTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVIG 381
            |.|.:.||:|.||||||.|||.|:|:|..|||:.:||..|.|:||..:|||||:||..|.||:.|
Mouse   235 LANPKAWINAATQIFFSLGLGFGSLIAFASYNEPSNNCQKHAIIVSIINSSTSIFASIVTFSIYG 299

  Fly   382 FMA-------------------------------HEQQRPVA----------------------- 392
            |.|                               .|.:..:|                       
Mouse   300 FKATFNYENCLNKVILLLTNSFDLEDGFLTVSNLEEVKNYLASTYPNKYSEVFPHIRNCSLESEL 364

  Fly   393 DVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRKR 457
            |.|..|.||||:||..|:..:..|.:||.|:|||||::|:.|........:|.:.|.........
Mouse   365 DTAVQGTGLAFIVYTEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTDSKVISSYLP 429

  Fly   458 KEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGI 522
            ||....:||.::..||:....:.|.|.|.|.:.||.: ..||.::..|.:::.:.||:.||...:
Mouse   430 KEAISGLVCLINCAVGMVFTMEAGNYWFDIFNDYAAT-LSLLLIVLVETIAVCYVYGLKRFESDL 493

  Fly   523 KDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLDY-------------SYPWWAHAF 574
            :.|.|...:.:||..|...:|.:.:|:|.|.:..:.....|.|             .||..|.|.
Mouse   494 RAMTGRTLSWYWKVMWAFVSPLLIVGLFIFYLSDYILTGTLQYQAWDATQGQLVTKDYPPHALAV 558

  Fly   575 GWFTALSSMLYIPL 588
            ......||.:.|||
Mouse   559 IGLLVASSTMCIPL 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 202/599 (34%)
Slc6a20aNP_631881.1 SLC5-6-like_sbd 2..577 CDD:294310 202/599 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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