DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and LOC100497766

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_031757157.1 Gene:LOC100497766 / 100497766 -ID:- Length:618 Species:Xenopus tropicalis


Alignment Length:596 Identity:304/596 - (51%)
Similarity:415/596 - (69%) Gaps:29/596 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 SLQSSSP-TTTDTSNKQQLVKIEQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGA 95
            :|.|.:| :|...||.      :::.:||.|::|::|:|||.|..||||||||||||||||||||
 Frog    17 ALDSEAPGSTLGHSND------KKVNERGHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGA 75

  Fly    96 FILPYIITLFLAGIPMFFMELALGQMLTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILA 159
            |::||::.....|||:||:|.||||..:.||:..: |:.|:|:|||||..|:...:|||||:|||
 Frog    76 FLIPYVVFFIFCGIPVFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYYIIILA 140

  Fly   160 WAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELT 224
            ||:||.|....|::||.||.:.|||..|| ::::.|:.                :|..|:.:..|
 Frog   141 WAIFYLFNCFSAELPWATCGHKWNTDKCV-EFQKLNMS----------------NASQISFVNAT 188

  Fly   225 DPVKEFWERRALQISHGIEEIGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLL 289
            .||.||||||.|.||.|||.||.:|||||..||..|.:||||||||.|.||||||.||.||||:|
 Frog   189 SPVMEFWERRVLAISDGIEHIGELRWELALCLLGAWTVCYFCIWKGTKSTGKVVYVTATFPYVML 253

  Fly   290 TILLVRGITLPGALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNV 354
            .|||:||:|||||.:|||||:.|:.|:|::.:||:||.|||||||.:.||.|.||||||.:.||.
 Frog   254 LILLIRGVTLPGASQGIKFYLYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNNNC 318

  Fly   355 YKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMW 419
            |:|.|::|.:||.||..|||.||||:||||:||..|:|:||.|||||||:.||.||..:|.:|:|
 Frog   319 YRDCLMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESGPGLAFIAYPRAVTMMPLAPLW 383

  Fly   420 SCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCITQGGM 482
            :.|||.||:.:||||||..:|..:||::|.:|::.|:  |:|:.|..:..:|||:||..:|:|||
 Frog   384 AALFFMMLIFLGLDSQFVCVESLVTAVVDMYPKIFRRGYRRELLILALSIVSYLLGLIMLTEGGM 448

  Fly   483 YIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICL 547
            |:||:.||||.||.|||::..||||.|.|.||.:||||.|:||||:.|.|..|:||...||.||.
 Frog   449 YVFQLFDSYAASGMCLLFVAVFECVCIGWVYGSNRFYDNIEDMIGHRPFVLIKWCWMFFTPGICA 513

  Fly   548 GVFFFNIVQWTPVKYLD-YSYPWWAHAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIRALVRI 611
            .:|.|.:|::.|:||.: |:||.|.:..||..|||||:.|||::.....:|.|...:|::.|. :
 Frog   514 SIFIFFLVKYKPLKYNNVYTYPAWGYGIGWMMALSSMVCIPLWIIIKMCQTEGSFIQKLKTLT-L 577

  Fly   612 DEDVTRLREKM 622
            .....::|.|:
 Frog   578 PSPELKMRGKL 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 296/556 (53%)
LOC100497766XP_031757157.1 SLC5-6-like_sbd 37..578 CDD:382020 296/558 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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