DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and slc6a6

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_017949178.2 Gene:slc6a6 / 100494063 XenbaseID:XB-GENE-991256 Length:616 Species:Xenopus tropicalis


Alignment Length:581 Identity:308/581 - (53%)
Similarity:406/581 - (69%) Gaps:30/581 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 PDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQ 120
            |.|..|:||:||:|||.|..|||||||||||||||||||||::||.|.||..|:|:||:|:.|||
 Frog    39 PQREKWASKIDFVLSVAGGFIGLGNVWRFPYLCYKNGGGAFLIPYFIFLFGGGLPVFFLEVVLGQ 103

  Fly   121 MLTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNT 184
            ..:.||:..: ||.|:|.|||||:.|:...:||||||||||.|:|.|.|.:..:||..|:..|||
 Frog   104 FTSEGGITCWEKICPVFTGIGYASIVIVSLLNVYYIVILAWGVYYLFQSFQGQLPWALCHQPWNT 168

  Fly   185 VNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGNIR 249
            .:||....|||...|                :::.|...|.||.||||.:.|.:|.||:::|.::
 Frog   169 ESCVEDTFRKNWTMW----------------MSMNSTNFTSPVTEFWEHKVLSLSKGIDDVGVLK 217

  Fly   250 WELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNF 314
            |:||..|||.|::|:|||||||:.|||||||||.||:::|.:||:||:|||||.||||||:.|:.
 Frog   218 WDLALCLLLTWVICFFCIWKGVRSTGKVVYFTATFPFIMLLVLLIRGVTLPGAAEGIKFYLYPDI 282

  Fly   315 SKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSV 379
            ::|.:.:|||||.|||||||.:.||.:.:||||||:..|.|:|.:::..:||.||..:||.||||
 Frog   283 TRLADPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNCYRDCMLLGCLNSGTSFVSGFAIFSV 347

  Fly   380 IGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFIT 444
            :||||.||...:||||.|||||||:.||.||..:|....|:.|||.||||:||||||..:||.||
 Frog   348 LGFMAQEQGVDIADVAESGPGLAFIAYPKAVSMMPLPSFWAILFFIMLLLLGLDSQFVEVEGQIT 412

  Fly   445 AIIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECV 507
            :::|.:|..|||  |:|||||:||.||||:|||.:|:||||:||:.|.||.||.||||:.|||||
 Frog   413 SLVDLYPSFLRKGYRREIFIAVVCFLSYLLGLTMVTEGGMYVFQLFDYYAASGVCLLWVAFFECV 477

  Fly   508 SISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLD-YSYPWWA 571
            :::|.||.|:|||.|:|||||.|..|.|:.|.|.||.:|:..|.|::.::||:.|.. |.||.||
 Frog   478 AVAWVYGADKFYDNIEDMIGYKPGPWMKWSWTVITPLLCVACFIFSLAKYTPLTYNKYYVYPDWA 542

  Fly   572 HAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIRALVRIDEDVTRLREKMLREAYAKEIE 632
            ...||..|||||:.|||.:.:...|:.|.|.|:|:|       ||..||.   ..:||:.|
 Frog   543 IGLGWVLALSSMICIPLVVVFHIVRSDGSLIERIKA-------VTAPREV---NRWAKDSE 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 300/556 (54%)
slc6a6XP_017949178.2 SLC6sbd_TauT 41..582 CDD:271398 302/563 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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