DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and slc6a4

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_017946918.1 Gene:slc6a4 / 100493853 XenbaseID:XB-GENE-22062972 Length:664 Species:Xenopus tropicalis


Alignment Length:640 Identity:253/640 - (39%)
Similarity:390/640 - (60%) Gaps:63/640 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 CKHESIEMSKEL-------------GHTT----SLQS---------------SSPT-TTDTSNKQ 47
            || .|:.:|:||             ||.:    ::||               |:|| |...:.:.
 Frog    38 CK-PSLRLSEELNKVHPSPGERGEPGHISNKYLAVQSPEAPCNGMRNGGDEGSTPTLTVLPACRA 101

  Fly    48 QLVKIE-QLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPM 111
            ::..:: ::.:|.:||.|:||:|||:|.|:.|||||||||:||:||||||::||:|.....|||:
 Frog   102 EIQHLQTEIGERETWSKKIDFLLSVIGYAVDLGNVWRFPYVCYQNGGGAFLIPYVIMAVFGGIPL 166

  Fly   112 FFMELALGQMLTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPW 175
            |:||||:||....|.:.:: ||.|:|||||||..:::.::..||..|:|||::|...|.|:::||
 Frog   167 FYMELAMGQYHRNGCISIWRKICPLFKGIGYAICMIALYVAFYYNTIMAWALYYLIFSFRSELPW 231

  Fly   176 RTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQI-- 238
            .:|.|.|||.||.:.::..::. |..         .|:|           |.:||:.|..|||  
 Frog   232 TSCLNEWNTGNCTNYFQNSSVG-WSN---------SSIS-----------PAEEFYTRLVLQIHK 275

  Fly   239 SHGIEEIGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGAL 303
            |.|:.::|.|.|:|...|||::.:.||.||||||.:||||:.||.|||::|.:||:||.|||||.
 Frog   276 SKGLHDLGGISWQLTLCLLLIFTVVYFSIWKGVKTSGKVVWVTATFPYIVLALLLIRGATLPGAW 340

  Fly   304 EGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSST 368
            .|:.||:.|::.||..:.||:||..|||||.|.|.|.|:|..|||||.||.|:||||..|||..|
 Frog   341 RGVLFYLQPDWEKLLTTAVWVDAAAQIFFSLGPGFGVLLAFASYNKFHNNCYQDALITSTVNCMT 405

  Fly   369 SMFAGFVIFSVIGFMAHEQQRPVADVAA-SGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGL 432
            |..:|.|||:|:|:||..:...|::||. :||.|.|:.|..|:..:|.|..::.:||.||:.:||
 Frog   406 SFMSGLVIFTVLGYMAEMRNLDVSEVAKDTGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGL 470

  Fly   433 DSQFCTMEGFITAIIDEWPQLLRKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFC 497
            ||.|..:||.|||::||:|.:..||:|:|:.::.::.:|..|:.:|.||.|:.::.:.|| :|..
 Frog   471 DSTFAGLEGVITAVLDEFPHIWGKRRELFVFLLISVCFLGALSTLTFGGAYMVKLFEEYA-TGPA 534

  Fly   498 LLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKY 562
            :|.::|.|.:::||.||:::|...:::|:|:.|..:||.||....|...|.:....:.....::.
 Frog   535 VLTVVFLEAIAVSWFYGINQFCRDVREMLGFSPGWFWKICWVAICPLFLLFIICSFMSSPPDLRL 599

  Fly   563 LDYSYPWWAHAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIRALVRIDEDVTR 617
            .:|.||.|....|:....||.:.:|.||.:|...|||.:.|  |.|..|..:|:|
 Frog   600 FNYQYPSWTVVLGYCIGTSSFICVPAYMVYLLTSTPGSIKE--RFLKSITPEVSR 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 236/556 (42%)
slc6a4XP_017946918.1 5HT_transport_N 48..91 CDD:367522 6/42 (14%)
SLC5-6-like_sbd 113..649 CDD:382020 237/559 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.