DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and slc6a9

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_004914027.1 Gene:slc6a9 / 100492204 XenbaseID:XB-GENE-948182 Length:638 Species:Xenopus tropicalis


Alignment Length:581 Identity:250/581 - (43%)
Similarity:380/581 - (65%) Gaps:30/581 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 QLVKIEQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMF 112
            :..|.::.|.||:|.::::|:|:.||.|:|||||||||||||:||||||:.||.|.|...|||:|
 Frog    17 EATKKDENPKRGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLVFCGIPLF 81

  Fly   113 FMELALGQMLTIGGLGVFKIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRT 177
            ||||:.||..:.|.|||::::|||||:||...|:|.::.:||.|::..|.:|||.||...:||..
 Frog    82 FMELSFGQFASQGCLGVWRVSPIFKGVGYGMMVVSTYIGIYYNVVICIAFYYFFASMNRILPWTY 146

  Fly   178 CNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVSA----LNIT-----SLELTDPVKEFWER 233
            |||.|||.||..            :::..:....::|:    ||:|     :|:.|.|.:|:|.|
 Frog   147 CNNLWNTENCAG------------VLSPNSSATFNISSQHSLLNLTMGLNQTLKRTSPSEEYWRR 199

  Fly   234 RALQISHGIEEIGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGIT 298
            ..|.||..|.:.|.:|..|.|.|.:.|::.:.|:.:|||.:||||||||.||||:||||.:||||
 Frog   200 HVLNISGDIGDFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSGKVVYFTATFPYVVLTILFIRGIT 264

  Fly   299 LPGALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCT 363
            |.||:.||.:|:.|.:.|:.:::||.||.:|||:|.|...|.|:.:.|||||.||.|:|::|:..
 Frog   265 LDGAINGILYYLTPQWDKILHAKVWGDAASQIFYSLGCAWGGLITMASYNKFHNNCYRDSIIISI 329

  Fly   364 VNSSTSMFAGFVIFSVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLL 428
            .|.:||::|||||||::||||......|::||..||||||:.||.|:..||.||:||.||||||:
 Frog   330 TNCATSVYAGFVIFSILGFMATHLGVDVSEVADHGPGLAFVAYPEALTLLPISPLWSILFFFMLI 394

  Fly   429 LIGLDSQFCTMEGFITAIIDE----WPQLLRKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILD 489
            |:||.:|||.:|..:|||:||    |  ::|.:..:.:. |..:.:|:|:...||.|:|...::|
 Frog   395 LLGLGTQFCLLETLVTAIVDEIGSDW--IIRWKTLVTLG-VAIIGFLLGIPLTTQAGIYWLLLMD 456

  Fly   490 SYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNI 554
            :||.| |.|:.:....|:::.:.||...::..|:.|:|:.|.::::|||...:|||...:..|.:
 Frog   457 NYAAS-FSLVIISCIMCIAVMYIYGHRNYFKDIEMMLGFPPPLFFQFCWRFFSPAIIFFILIFTV 520

  Fly   555 VQWTPVKYLDYSYPWWAHAFGWFTALSSMLYIPLY-MFWLWKRTPGELSEKIRALVRIDED 614
            :|:.|:||.||.||.||...|:..||||::.|||| :|.:|:.......::::..|:..:|
 Frog   521 IQYRPIKYNDYVYPDWALTIGFLMALSSVICIPLYAVFRVWRSEGHTFLQRLKNAVKPSKD 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 247/566 (44%)
slc6a9XP_004914027.1 SLC6sbd_GlyT1 11..595 CDD:212067 250/581 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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