DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and slc6a17

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_002933031.1 Gene:slc6a17 / 100490416 XenbaseID:XB-GENE-964419 Length:725 Species:Xenopus tropicalis


Alignment Length:689 Identity:212/689 - (30%)
Similarity:341/689 - (49%) Gaps:126/689 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 DVCKHESIEMSKELGHTTSLQSSSPTTTDTSNKQQLVKIEQLPDRGSWSSKMDFILSVVGLAIGL 78
            |:..||.....|......|.|.|.|        :||....:|.||.:|::|:.:||:.:|.::||
 Frog    23 DLLAHEEPIDHKASALNVSSQDSQP--------KQLEDSSELEDRPAWNNKLQYILAQIGYSVGL 79

  Fly    79 GNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQMLTIGGLGVFK-IAPIFKGIGYA 142
            ||||||||||.||||||:::||:|.|.:.|||:||:|||:||.:..|.:||:. |.|...|||||
 Frog    80 GNVWRFPYLCQKNGGGAYMVPYLILLIIIGIPLFFLELAVGQRIRRGSIGVWNYICPRLGGIGYA 144

  Fly   143 AAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTT 207
            :.|:..::.:||.||:.|::||||.|.:..:||..|                     ..:.||  
 Frog   145 SCVVCFFVGLYYNVIIGWSIFYFFQSFQYPLPWNEC---------------------PTVKNG-- 186

  Fly   208 QKVCSVSALNITSLEL--TDPVKEFWERRALQISHGIEEIGNIRWELAGTLLLVWILCYFCIWKG 270
                   ::|:...|.  :.....||.|.||.||:.|.|.|.:.|::...||:.|.:....:.||
 Frog   187 -------SVNVVEAECDKSSATTFFWYREALDISNSISEGGGLNWKMTLCLLVAWTMVCMAMIKG 244

  Fly   271 VKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYG 335
            ::.:|||:||::|||||:|...|:||:.|.|:::||...:.|...|:.:.:||.:|.||:||:.|
 Frog   245 IQSSGKVMYFSSLFPYVVLICFLIRGLFLRGSVDGILHMLTPKVEKMLDPQVWREAATQVFFALG 309

  Fly   336 LGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQQRPVA-------- 392
            ||.|.::|..||||..||...||.:|..:|..||:.|..|:|:|:||.|:.......        
 Frog   310 LGFGGVIAFSSYNKQDNNCQFDAALVSFINFFTSVLATLVVFAVLGFKANVMNEKCVVQNAEKIL 374

  Fly   393 --------------------------------------------------------DVAASGPGL 401
                                                                    |.|..|.||
 Frog   375 GYINTHDIDYSLIPPHVNFSHLTTEDYAKMYQVIKTVKEDHFQDLHLDACVLEDELDKAVQGTGL 439

  Fly   402 AFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLLRKRKEIFIAIVC 466
            ||:.:..|:...|.||.||.:|||||:.:||.|...||.|.||.|||.:    :.||||.....|
 Frog   440 AFIAFTEAMTHFPASPFWSVMFFFMLINLGLGSMIGTMSGIITPIIDTF----KVRKEILTVSCC 500

  Fly   467 ALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPT 531
            .:::|:||..:.:.|.|...:.|.|:.: ..|..::..|.::::|.||..:|...:.:|:|:.|.
 Frog   501 IVAFLLGLIFVQRSGNYFVNMFDDYSAT-LPLTIVVILENIAVAWVYGTKKFMQELTEMLGFRPY 564

  Fly   532 VWWKFCWCVTTPAICLGVFFFNIVQW--TPVKYLDY----------SYPWWAHAFGWFTALSSML 584
            .::.:.|...:|.....:...:::|.  :|..|..:          .||.||.:......:.::|
 Frog   565 SYYFYSWKYVSPIFMAILLTASVIQLGISPPGYSAWIRELAAEQFVLYPTWALSLLITLIILAIL 629

  Fly   585 YIP-LYMFWLWKRTPGELSEKIRALVR--IDEDVTRLRE 620
            .:| :::.|.::..| :.|.|:....:  :.:|::.|.:
 Frog   630 PVPVIFILWQFQLIP-DGSNKLSVSYKKGMMKDISNLED 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 198/634 (31%)
slc6a17XP_002933031.1 SLC6sbd_NTT4 59..647 CDD:271403 196/623 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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