DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and slc6a14.2

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_002939711.4 Gene:slc6a14.2 / 100485126 XenbaseID:XB-GENE-855704 Length:642 Species:Xenopus tropicalis


Alignment Length:608 Identity:251/608 - (41%)
Similarity:370/608 - (60%) Gaps:71/608 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SKELGHTTSLQSSSPTTTDTSNKQQLVKIEQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLC 88
            ||:||  |.::|     || .||          :||:||||.:::||:||.|:|||||||||||.
 Frog    17 SKDLG--THVES-----TD-ENK----------ERGNWSSKSEYLLSMVGYAVGLGNVWRFPYLT 63

  Fly    89 YKNGGGAFILPYIITLFLAGIPMFFMELALGQMLTIGGLGVFKIAPIFKGIGYAAAVMSCWMNVY 153
            :::|||||::||.|.|.|||:|:||:|.:|||..::|.:.::|:.|||:|:|....::|..:.:|
 Frog    64 FQHGGGAFLIPYAIMLALAGLPLFFLECSLGQFSSLGPVAMWKVLPIFEGVGITMVLISTLVTIY 128

  Fly   154 YIVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYERKNLHCWDKIINGTTQKVCSVS---- 214
            |.||:|::::|.|.|..:.:||..|..|                 .|:..:.|.:.:|:|:    
 Frog   129 YNVIIAYSLYYLFASFTSILPWSECFEW-----------------ADEKCSKTPKGLCNVTIGEE 176

  Fly   215 ---ALNIT---------------SLELTDPVKEFWERRALQISHGIEEIGNIRWELAGTLLLVWI 261
               .:|:|               .||...|.|::|::.||:.|.|:.|.||:.|.||..|||.||
 Frog   177 DIGMVNLTWVKANNYTCIANSTLYLETELPSKQYWDKVALRRSGGLHETGNVVWYLALCLLLAWI 241

  Fly   262 LCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYI--IPNFSKLTNSEVWI 324
            :....::||:|.:||||||||:|||.:|.|||:||.||.||.:||.|||  ..:.|||:|::||.
 Frog   242 IIGAALFKGIKSSGKVVYFTAIFPYAVLLILLIRGATLEGAYDGISFYIGTQSDISKLSNADVWK 306

  Fly   325 DAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQQR 389
            ||.||||||.....|.||||.|||||.||.|.||::||..|..||:||||.|||::|.||.:.::
 Frog   307 DAATQIFFSLSTAWGGLVALSSYNKFHNNCYADAIMVCITNCLTSVFAGFAIFSILGHMAFKAEK 371

  Fly   390 PVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQLL 454
            .|.||..||..|||:.||.|:.|||.:|:||.|||||||.:||||||.::|...|.|.|.:|:::
 Frog   372 EVKDVVDSGFALAFIAYPEALSQLPVAPLWSILFFFMLLTLGLDSQFASVETITTTIHDAYPKVM 436

  Fly   455 RKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYGVDRFY 519
            :|.:.|.....|.:.:|:|:.|:||.|:|...::| |..:|:.:|.....|.|.|.|.||.:||.
 Frog   437 KKMRGIITVGACIMFFLLGILCVTQSGIYWVDLID-YFCAGWGILIAAILELVGICWIYGGNRFI 500

  Fly   520 DGIKDMIG---YYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLDYSYPWWAHAFGWFTALS 581
            :.|:.|||   :...:||:.||...||.:...:|.:::|.:...|:.:.:||.|..|.||...:.
 Frog   501 EDIEMMIGKKHWIFWLWWRLCWFFLTPLLLTVIFIWSLVTFDTPKHGNVAYPSWGVALGWCMIIF 565

  Fly   582 SMLYIPLYMF--------WLWKR 596
            .:::||:...        .||:|
 Frog   566 CIIWIPILAVVKIIKAKGTLWER 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 241/574 (42%)
slc6a14.2XP_002939711.4 SLC5-6-like_sbd 33..612 CDD:382020 241/574 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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