DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and slc6a13

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_002667408.5 Gene:slc6a13 / 100332592 ZFINID:ZDB-GENE-170607-2 Length:621 Species:Danio rerio


Alignment Length:572 Identity:302/572 - (52%)
Similarity:413/572 - (72%) Gaps:22/572 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 QLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELAL 118
            ::.|||.||:|::|:|||.|..|||||||||||||||||||||.:||:|.||..|||:||:|::|
Zfish    26 KMKDRGQWSNKLEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLEISL 90

  Fly   119 GQMLTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWW 182
            ||..:.||:..: ||:|:|:|||||..|:...:|.|||::|||.:||...|...::||.:|||.|
Zfish    91 GQYTSEGGITCWRKISPLFEGIGYATQVIVALLNFYYIIVLAWGIFYLSNSFTWNLPWSSCNNTW 155

  Fly   183 NTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGN 247
            ||.:|: :::|:|    |.:         ..|.|:    ..|.||.||||||.|:||.|||:||.
Zfish   156 NTESCM-EFQRRN----DSV---------DQSYLD----NATSPVIEFWERRVLRISSGIEDIGT 202

  Fly   248 IRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIP 312
            :.|:|...|||.|:|||||||||||.|||||||||.||||:|.|||:||:|||||..||:||:.|
Zfish   203 LHWDLVLCLLLAWVLCYFCIWKGVKSTGKVVYFTATFPYVMLLILLIRGVTLPGASRGIQFYLYP 267

  Fly   313 NFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIF 377
            :..:|.:.:||:||.|||||||.:.||.|.|||||||:.||.|:|:|.:|.:||.||..|||.||
Zfish   268 DLGRLADPQVWMDAGTQIFFSYAICLGCLTALGSYNKYNNNCYRDSLALCFLNSGTSFVAGFAIF 332

  Fly   378 SVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGF 442
            |::|||::||..|:::||.|||||||:.||.||..:|.||:|:|.||.|::|:||||||..:|..
Zfish   333 SILGFMSYEQNVPISEVAESGPGLAFIAYPRAVSMMPISPLWACFFFIMIVLLGLDSQFVCVESL 397

  Fly   443 ITAIIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFE 505
            :||::|.:|...|:  |:|:.|.:|..:|:||||..:|:||||:||:.|.||.||.|||::..||
Zfish   398 VTAMVDMYPSFFRRKNRRELLILVVAIVSFLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFE 462

  Fly   506 CVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKY-LDYSYPW 569
            .|.|:|.||.:||||.|:|||||.|..:.|:||...|||.|.|.|.|:::::||:|| .:|.|||
Zfish   463 TVCIAWIYGANRFYDNIEDMIGYRPGPYIKYCWLFFTPATCFGTFAFSLIKYTPLKYNNEYVYPW 527

  Fly   570 WAHAFGWFTALSSMLYIPLYMFWLWKRTPGELSEKIRALVRIDEDVTRLREK 621
            |.:|.||..|||||:.:||::.:....|.|.|.|:::.|:|...|:.:.|.:
Zfish   528 WGYALGWMLALSSMICVPLWVIYRMGTTKGSLMERVQFLIRPSPDLPKSRRE 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 298/556 (54%)
slc6a13XP_002667408.5 SLC6sbd-TauT-like 30..569 CDD:271387 298/556 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.820

Return to query results.
Submit another query.