DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and si:ch211-117c9.5

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_001922963.4 Gene:si:ch211-117c9.5 / 100150452 ZFINID:ZDB-GENE-110408-2 Length:652 Species:Danio rerio


Alignment Length:611 Identity:295/611 - (48%)
Similarity:406/611 - (66%) Gaps:26/611 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DGGGDVCKHESIE--------MSKELGHTTSLQSSSPTT--TDTSNKQQLVKIEQL--PDRGSWS 62
            |||.  |:.||.|        :|:..|..|.:...|...  .||.:     ...:|  .||.:||
Zfish    10 DGGS--CEDESQEDAEVARPLVSETEGSNTDVAEPSVCAGLVDTGD-----PTAELGHSDRQTWS 67

  Fly    63 SKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELALGQMLTIGGL 127
            .:||||:|.||.|:||||||||||||||||||.|::|||:.:|..|||:||:|:||||.:..||:
Zfish    68 RQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYILMVFFGGIPVFFLEIALGQFMKQGGV 132

  Fly   128 GVFKIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWWNTVNCVSQYE 192
            ..:.|||:|||:|.|:.|:..:.|.|||::|.|.:::...|..:.:||.||.:.|||:||.:.:.
Zfish   133 ATWNIAPLFKGLGLASMVIVFFCNTYYIMVLVWGLYFLAHSFTSSLPWATCGHEWNTINCTTNFS 197

  Fly   193 RKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGNIRWELAGTLL 257
            |.   |:::..:.......::||..:....|...|.|||||:.|::|.|::|:|:|...:...||
Zfish   198 RV---CFNQSPSHPNNSSLNISAGCLEPTGLRSSVMEFWERKVLRLSGGLDEVGDISGHMVLCLL 259

  Fly   258 LVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIPNFSKLTNSEV 322
            ..||:.|||||||||..||||||||:|||::|.:|.|.|::||||:.||.:|:.||:|||:.::|
Zfish   260 ATWIIVYFCIWKGVKSAGKVVYFTAVFPYLVLVVLFVHGVSLPGAINGIIYYLKPNWSKLSEAQV 324

  Fly   323 WIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIFSVIGFMAHEQ 387
            ||||.|||||||.:|||.|.||||||:|.||.|:||.|:..:||.||.|||||:|||:||||.||
Zfish   325 WIDAATQIFFSYAIGLGALTALGSYNRFNNNCYQDAFILALINSGTSFFAGFVVFSVLGFMAAEQ 389

  Fly   388 QRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGFITAIIDEWPQ 452
            ...:::||.|||||||:.||.||..:|.:|:|:.|||.|||::||||||..:|||||.|:|..|.
Zfish   390 DVDISNVAESGPGLAFIAYPKAVSLMPLAPLWAVLFFLMLLVLGLDSQFVGVEGFITGIMDMLPP 454

  Fly   453 ---LLRKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFECVSISWCYG 514
               :...|:|:.:||.|...:.:.|:.:|:||||:||:.|.|:.||..|||..|:|||.::|.||
Zfish   455 KSFIGSLRREVVVAICCFTCFTIDLSMVTEGGMYVFQLFDYYSASGITLLWQAFWECVVVAWVYG 519

  Fly   515 VDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKY-LDYSYPWWAHAFGWFT 578
            .|||.|.:..||||.|..:.|:||...||.:|:|||.|::|.:..:.| ..|.||||..|.|||.
Zfish   520 ADRFMDDVACMIGYRPLPYMKWCWSYITPVVCMGVFLFHVVNYKRLVYNAVYVYPWWGEALGWFL 584

  Fly   579 ALSSMLYIPLYMFWLWKRTPGELSEK 604
            ||||||.|||.:.:......|.|.|:
Zfish   585 ALSSMLCIPLTVLYKLLHCKGSLMER 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 280/551 (51%)
si:ch211-117c9.5XP_001922963.4 SLC5-6-like_sbd 63..652 CDD:294310 280/551 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.820

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