DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gat and slc6a18

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001108369.1 Gene:slc6a18 / 100141332 ZFINID:ZDB-GENE-080219-9 Length:618 Species:Danio rerio


Alignment Length:635 Identity:217/635 - (34%)
Similarity:325/635 - (51%) Gaps:130/635 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 TTTDTSNKQQLVKIEQLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIIT 103
            |.::||:.|         :|..|.:|:.::|:.||.|:||||:|||||||...|||||::||:|.
Zfish     3 TASETSSVQ---------ERPKWDNKVQYLLTCVGFAVGLGNIWRFPYLCQIYGGGAFLIPYLIA 58

  Fly   104 LFLAGIPMFFMELALGQMLTIGGLGVF-KIAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFM 167
            |...|:|:.::|||:||.|..|.:||: .|:|:..|:|.|:.|:|..:.::|..||||.::|||.
Zfish    59 LVFEGLPLLYLELAIGQSLRKGSIGVWHSISPLLGGVGVASMVVSFLVGLFYNTILAWVLWYFFH 123

  Fly   168 SMRADVPWRTC---NNWWNTV-NCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVK 228
            |....:||..|   :|....| .|||                                  :.||.
Zfish   124 SFEDPLPWSQCPINDNLEGYVEECVS----------------------------------STPVN 154

  Fly   229 EFWERRALQISHGIEEIGNIRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILL 293
            .:|.|:.|.||..||:.|:::|.|...|...|.:.|.|..:|::..||.||.||.|||::|||.|
Zfish   155 YYWYRQTLNISPDIEQSGSLQWTLVLCLATAWSIVYICFIRGIETIGKAVYVTATFPYLVLTIFL 219

  Fly   294 VRGITLPGALEGIKFYIIPNFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDA 358
            ||.:|||||.:|:::...|:::.|||.:||:||.||||||..|..|.|:|..|||...|:..:||
Zfish   220 VRALTLPGATDGLQYLFTPDWTLLTNPQVWLDAATQIFFSLSLAFGGLIAFSSYNPKKNDCERDA 284

  Fly   359 LIVCTVNSSTSMFAGFVIFSVIGFMA--------------------------------------- 384
            |.|..:||:||::|...||:::||.|                                       
Zfish   285 LFVGIINSATSLYASIPIFAILGFKATSNFNSCVNSNILDLTNAFDIGDRNITIENYDSWLRDLN 349

  Fly   385 -------------HEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQF 436
                         |...:...|.:|||.||||:|:..||:::|||.:|:.|||.||..:||.|.|
Zfish   350 ASDPDRVSSLNLKHCVLKNFLDQSASGTGLAFIVFTEAVIEMPGSQVWAVLFFVMLFSLGLSSMF 414

  Fly   437 CTMEGFITAIID-----EWPQLLRKRKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGF 496
            ..:||.:|.::|     .|     ..||||..::|.:::||.|......|.|..:|.:|| |...
Zfish   415 GNLEGVLTPLLDLHMVPRW-----MPKEIFTGLICVVNFLVALIFTLGSGNYWLEIFNSY-VGSV 473

  Fly   497 CLLWLIFFECVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFF-FNIVQ---- 556
            .||.:.|||.:::...||:.||.|.|:.|.|..|.::|:.||...:|.:.|.|.. :.:||    
Zfish   474 PLLVIAFFEIIAVVCFYGIKRFSDDIEQMTGRRPNLFWRCCWMGISPVMLLVVLVAYVVVQVQKH 538

  Fly   557 -----WTPVKYLDY------SYPWWAHAFGWFTALSSMLYIPLYMFWLWK 595
                 |.| :|.::      .|..|  .|.....|||:..|.:.:..|::
Zfish   539 PTYPAWNP-QYENFPETEEKPYSTW--VFSICVLLSSVPVISIPIVALYR 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 213/616 (35%)
slc6a18NP_001108369.1 SLC5-6-like_sbd 12..587 CDD:294310 213/617 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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