DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gat and si:ch211-132b12.3

DIOPT Version :9

Sequence 1:NP_651930.2 Gene:Gat / 43805 FlyBaseID:FBgn0039915 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001076419.1 Gene:si:ch211-132b12.3 / 100002232 ZFINID:ZDB-GENE-050419-161 Length:577 Species:Danio rerio


Alignment Length:538 Identity:257/538 - (47%)
Similarity:364/538 - (67%) Gaps:22/538 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 QLPDRGSWSSKMDFILSVVGLAIGLGNVWRFPYLCYKNGGGAFILPYIITLFLAGIPMFFMELAL 118
            |..:||.|..|.:|:|:|.|..:|:|||||||||||:||||.|::||::.:...|:|:|.:|..:
Zfish     7 QTEERGFWGRKAEFLLAVAGNVVGVGNVWRFPYLCYRNGGGVFLIPYLVFVMTCGVPLFLLETVM 71

  Fly   119 GQMLTIGGLGVFK-IAPIFKGIGYAAAVMSCWMNVYYIVILAWAVFYFFMSMRADVPWRTCNNWW 182
            ||....||:..:. :.|:.:|:|||..::..:..:|:.:|||||:||...|..:.:||.:|:|.|
Zfish    72 GQFTHEGGITCWHLLCPLAQGVGYAGQLIELYSCMYFTIILAWALFYLIFSFSSQLPWASCDNIW 136

  Fly   183 NTVNCVSQYERKNLHCWDKIINGTTQKVCSVSALNITSLELTDPVKEFWERRALQISHGIEEIGN 247
            ||.|||      ||...:...|.|||       :|.||     ...||||||.|.:|.||||||.
Zfish   137 NTDNCV------NLAAGNLTFNRTTQ-------INSTS-----AATEFWERRVLSLSGGIEEIGK 183

  Fly   248 IRWELAGTLLLVWILCYFCIWKGVKWTGKVVYFTALFPYVLLTILLVRGITLPGALEGIKFYIIP 312
            |.||:|..|.::||:||||||||||.|||||||||.||||:|.:||:||:||||||:|:.||:.|
Zfish   184 INWEIALCLFVMWIICYFCIWKGVKSTGKVVYFTATFPYVMLLVLLIRGLTLPGALQGVVFYLYP 248

  Fly   313 NFSKLTNSEVWIDAVTQIFFSYGLGLGTLVALGSYNKFTNNVYKDALIVCTVNSSTSMFAGFVIF 377
            ..:.|.:.:||::|.||:||||.|..|.|:||||||:::||.|:|:..:|.:||.||..|||.:|
Zfish   249 EPAHLADPQVWMEAGTQVFFSYSLCSGILIALGSYNQYSNNCYRDSFWLCLLNSGTSFVAGFAVF 313

  Fly   378 SVIGFMAHEQQRPVADVAASGPGLAFLVYPSAVLQLPGSPMWSCLFFFMLLLIGLDSQFCTMEGF 442
            ||:|||||.|..||.:||.|||||||:.||.||..:|...:|:..||.|::|:||||||..||..
Zfish   314 SVLGFMAHVQGVPVEEVAESGPGLAFIAYPQAVAMMPFPQLWAVCFFIMIILLGLDSQFVAMECV 378

  Fly   443 ITAIIDEWPQLLRK--RKEIFIAIVCALSYLVGLTCITQGGMYIFQILDSYAVSGFCLLWLIFFE 505
            :|::.|.:|::||:  |:|:|:.::|...:...|..:|:||||:||:.|:||.:|.|.|:|..||
Zfish   379 VTSVTDLFPEVLRRAGRRELFVLLLCLTCFFGQLIMVTEGGMYVFQLFDNYASNGACFLFLSVFE 443

  Fly   506 CVSISWCYGVDRFYDGIKDMIGYYPTVWWKFCWCVTTPAICLGVFFFNIVQWTPVKYLD-YSYPW 569
            .::|.|.:|.::.:|.||||....|..|:..||...||.:.|..|.:::|::||:.|.. |.||.
Zfish   444 SLTIGWIFGAEKMFDIIKDMTESRPNYWFMLCWKYLTPLVSLTSFVYSMVRYTPLTYNRWYVYPD 508

  Fly   570 WAHAFGWFTALSSMLYIP 587
            |||..||..||||:|.:|
Zfish   509 WAHVLGWLLALSSILLVP 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GatNP_651930.2 SLC6sbd-TauT-like 58..611 CDD:271387 256/534 (48%)
si:ch211-132b12.3NP_001076419.1 SLC6sbd-TauT-like 11..550 CDD:271387 256/534 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145627at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100347
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.820

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