DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mav and Gdf9

DIOPT Version :10

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_067704.2 Gene:Gdf9 / 59304 RGDID:71038 Length:440 Species:Rattus norvegicus


Alignment Length:315 Identity:67/315 - (21%)
Similarity:115/315 - (36%) Gaps:86/315 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   435 LNQSNKNSSQ---QLTLKVYQLLSANRRRKITSRKIEFGNVGFQETRTQWIEFDVTKAVRSWLNK 496
            ||.|..:||.   ...|.|.:.:|::   |.|.|    ....|...:.:|||.|||..::..:..
  Rat   162 LNNSAASSSTVTCVCDLVVKEPMSSS---KATPR----APYSFTLRKHRWIEMDVTSLLQPLVAS 219

  Fly   497 SHE--NLGIEIQCDKCKSIGARILSDFSP---------STPP--------------------RST 530
            |..  :|.:...|.:          |.:|         |.||                    :||
  Rat   220 SERSIHLSVNFTCTR----------DQAPENGTFNMPLSVPPSLILYLNDTSTQAYHSWQSLQST 274

  Fly   531 ASSDEHLNLMPVLNIIGHGTLNSQQHGDADIHQIMLTNNRSDQYVHHRSNHDSTWRKDKWTNNCY 595
            ....:|    |     |.|::.::     .:.:......||.:  |.|.....:....|.....:
  Rat   275 QRHSQH----P-----GQGSVTTR-----PVEEEATEVERSPR--HRRGQKTLSSETKKPLTASF 323

  Fly   596 KLHQ----------RCCRNQLDVAFKSIKGFEFILQPKVFDAGYCHGRCP--PRH---NPAHHHA 645
            .|.:          .|..:...::|..:|...:|:.|..::..||.|.||  .||   :|.  |.
  Rat   324 NLSEYFRQFLFPQNECELHDFRLSFSQLKWDNWIVAPHRYNPRYCKGDCPRAVRHRYGSPV--HT 386

  Fly   646 LLQSLIWQEDHKRAPRPCCTPSKLEMLEILHVDENHSDKLKISTWSDMQVVECAC 700
            ::|::|:::.....|||.|.|.|...|.:|.::.:.|  :....:.||....|.|
  Rat   387 MVQNIIYEKLDPSVPRPSCVPGKYSPLSVLTIEPDGS--IAYKEYEDMIATRCTC 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <438..518 CDD:480997 19/84 (23%)
TGF_beta_maverick 598..700 CDD:381633 28/116 (24%)
Gdf9NP_067704.2 None

Return to query results.
Submit another query.