DRSC/TRiP Functional Genomics Resources

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Protein Alignment mav and gdf6a

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_001153466.1 Gene:gdf6a / 566470 ZFINID:ZDB-GENE-980526-373 Length:404 Species:Danio rerio


Alignment Length:498 Identity:106/498 - (21%)
Similarity:170/498 - (34%) Gaps:154/498 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 LETKRHSKPSKRVDETRLKHLVLKGLGIKKLPDMRKVNISQAEYSSKYIEYLSRLRSNQEK---G 297
            |.:::.||.::...:.:..|..||.:........|:.:.........|:..:.|..|..||   .
Zfish    27 LISQKRSKGARSAFDGQRSHKFLKEILASSPGASRRDDFKDPVVPHDYMISIYRTYSAAEKLGLN 91

  Fly   298 NSYFNNFMGASFTRDLHFLSITTNGFNDISNKRLRHRRSLKKINRLNQNPKKHQNYGDLLRGEQD 362
            .|:|.:...|:     ...|....|.:|::...||.:..|..::.|:                  
Zfish    92 ASFFRSSKSAN-----TITSFVDKGKDDLTLSPLRRQTYLFDVSTLS------------------ 133

  Fly   363 TMNILLHFPLTNAQDANFHHDKIDEANVRLMLLYSSSLATNFRRGPGSRKNKISQISGNDNI--- 424
                                ||.:.....|.:         ||:.||..:   ...||..|:   
Zfish   134 --------------------DKEELVGAELRI---------FRKSPGDVQ---PSPSGVYNLHLL 166

  Fly   425 ----ERHCNFGDVNLNQSNK---------------NSSQQLTLKVYQLLSANRRRKITSRK---- 466
                ||......::|..|.|               :...||.|::          |:|..|    
Zfish   167 SCRSERPLASRSIDLQDSRKAEWEVLDVWGIFKHRHQENQLCLQL----------KVTYGKSDTE 221

  Fly   467 IEFGNVGF-QETRTQWIEFDVTKAVRSWLNKSHENLGIEIQCDKCKSIGARILSDFSPSTPPRST 530
            |:...:|| :.:|||.....:....||   |..|||..|:: :|.||.|                
Zfish   222 IDLKQLGFHRHSRTQQERAILVVYTRS---KKRENLFNEMK-EKIKSRG---------------- 266

  Fly   531 ASSDEHLNLMPVLNIIGHGTLNSQQHGDADIHQIMLTNNRSDQYVHHRSNHDSTWRKDKWTNNCY 595
             ..||.               .|.....|...:....|||      |...|.   :|.|      
Zfish   267 -DDDEE---------------ESALQFKARRRRRTALNNR------HGKRHG---KKSK------ 300

  Fly   596 KLHQRCCRNQLDVAFKSIKGFEFILQPKVFDAGYCHGRC--PPR-HNPAHHHALLQSLIWQEDHK 657
               .||.:..|.|.||.:...::|:.|..::|.:|.|.|  |.| |....:||::|:|:...|..
Zfish   301 ---SRCSKKALHVNFKELGWDDWIIAPLDYEAYHCEGVCDFPLRSHLEPTNHAIIQTLMNSMDPN 362

  Fly   658 RAPRPCCTPSKLEMLEILHVDENHSDKLKISTWSDMQVVECAC 700
            ..|..||.|:||..:.||::|..::...|  .:.||.|.:|.|
Zfish   363 STPPSCCVPTKLSPISILYIDSGNNVVYK--QYEDMVVEQCGC 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 19/68 (28%)
TGF_beta 599..700 CDD:278448 34/103 (33%)
gdf6aNP_001153466.1 TGFb_propeptide 57..245 CDD:279078 43/252 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 263..304 15/90 (17%)
TGFB 308..404 CDD:214556 33/98 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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