DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mav and gdf10a

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:XP_691459.3 Gene:gdf10a / 563003 ZFINID:ZDB-GENE-090312-17 Length:441 Species:Danio rerio


Alignment Length:496 Identity:110/496 - (22%)
Similarity:170/496 - (34%) Gaps:168/496 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   274 ISQAEYS--SKYIEYLSRLR------------SNQEKGNSYFNNFMGASFTRDLHFLSITTNGFN 324
            :||..|.  .||....:||:            .|.|:..||..|.  .|.......||.|.:.|.
Zfish    44 LSQHMYKLYEKYNTEPNRLKEGNTVRSFKAKPENVEQRVSYRLNL--TSLQGSEVILSSTFHFFF 106

  Fly   325 DISNKRLRHRR-----------------SLKKINRLNQNPKKHQNYGDLL---------RG---- 359
            |   ||.|.|.                 .|..|..|.::|..:...|.||         ||    
Zfish   107 D---KRPRQRSWFCKRFKNPSCRITNFPLLPSIRLLFRSPSVNSTTGSLLGNLTVVPHRRGTWQS 168

  Fly   360 ---------EQDTMNILLHFPLTNAQDANFHHDKIDEANVRLMLLYSSSLATNFRRGPGSRKNKI 415
                     .:|...:|:.......:....:.|::..:.:..:|:|::.||.       |..|.:
Zfish   169 KDVSVIMKEARDRNQLLITLEFDYGEQYQRYQDQLSPSTLPYLLVYANDLAI-------SEPNSV 226

  Fly   416 SQISGNDNIERHCNF-GDVNLNQSNKNSSQQLTLKVYQLLSANRRRKITSRKIEFGNVG-FQETR 478
            :.     :::|:..| ||....|| .:||..:.:|               |::|..... .:...
Zfish   227 AV-----SLQRYDPFIGDQQPAQS-PDSSPDIRVK---------------RELELDFTDPIENNE 270

  Fly   479 TQWIEFDVTKAVRSWLNKSHENLGIEIQCDKCKSIGARILSDFSPSTP----PRSTASSDEHLNL 539
            ...:|::..|....|                        .|.:.|..|    ........||.: 
Zfish   271 LPEVEYNSFKQHDMW------------------------ESAYYPLKPKPFKKERRRKGQEHTD- 310

  Fly   540 MPVLNIIGHGTLNSQQHGDADIHQIMLTNNRSDQYVHHRSNHDSTWRKDKWTNNCYKLHQRCCRN 604
                   |.|.           .|::    |.|:....::      |:.:|     |..:.|.|.
Zfish   311 -------GFGK-----------SQVL----RFDEKTMKKA------RRRQW-----KEPRSCSRR 342

  Fly   605 QLDVAFKSIKGFEFILQPKVFDAGYCHGRCP---PRHNPAHHHALLQSLIWQEDHKRA------- 659
            .|.|.|..|...|:||.||.|||.||.|.|.   |:.....:||.:||::      :|       
Zfish   343 YLKVDFADIGWNEWILSPKSFDAFYCAGTCEFPIPKVVRPSNHATIQSIV------KAVGIIPGI 401

  Fly   660 PRPCCTPSKLEMLEILHVDENHSDKLKISTWSDMQVVECAC 700
            |.|||.|.|::.|.:|.|||:.:..|||  :.:|.|..|||
Zfish   402 PEPCCVPEKMKPLSVLFVDESKNIVLKI--YPNMSVETCAC 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 8/64 (13%)
TGF_beta 599..700 CDD:278448 41/110 (37%)
gdf10aXP_691459.3 TGF_beta 337..440 CDD:278448 41/110 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.