DRSC/TRiP Functional Genomics Resources

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Protein Alignment mav and gdf1

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_001016819.1 Gene:gdf1 / 549573 XenbaseID:XB-GENE-481419 Length:361 Species:Xenopus tropicalis


Alignment Length:353 Identity:80/353 - (22%)
Similarity:130/353 - (36%) Gaps:102/353 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   385 IDEANV------------RLMLLYSSSLATNFRRGPGSRKNKISQISGNDNIERHCNFGDVNLN- 436
            ::|.||            |.:|.||.    |........|.....||..:..|| ...|.:.|. 
 Frog    73 VEEFNVPGSVIRVFPDQGRFVLPYSD----NSHLTQCLEKRLFFNISAIEKEER-VTMGQLELRF 132

  Fly   437 QSNKNSSQQLTLKVYQLLSANRR---RKITSRKIEFGNVGFQETRT--QWIEFDVTKAVRSWLNK 496
            ..|....:...|::|:.|....:   |...|||:    :..|..|.  :.:.|::|...:||.:.
 Frog   133 TQNTYYGRVFDLRLYRTLQITLKGMGRNKMSRKL----LVAQTFRLLHKSVFFNLTDVCQSWRDP 193

  Fly   497 SHENLGIEIQC-------------DKCKSIGARILSDFSPSTPPRSTASSDEHLNLMPVLNIIGH 548
            . :|||:.::.             |:||        ||....          :.:||.|      
 Frog   194 L-KNLGLVLEIFPIKEGSWLSTPKDECK--------DFQTFL----------YTSLMMV------ 233

  Fly   549 GTLNSQQHGDADIHQIMLTNNRSDQYVHHRSNHDSTWRKDKWTNNCYKLHQRCCRNQLDVAFKSI 613
             |||..|          ....|               ||..::...:.....|.:.:|.|.||.:
 Frog   234 -TLNPMQ----------CKRPR---------------RKRSYSKLPFTASNICKKRRLYVEFKDV 272

  Fly   614 KGFEFILQPKVFDAGYCHGRCPPRHNP------AHHHALLQSLIWQEDHKRAPRPCCTPSKLEML 672
            ....:::.|:.:.|.||:|.||   .|      ..:||:||:|:...:....|.|||.|:|:..:
 Frog   273 GWQNWVIAPRGYMANYCYGECP---YPLTEILNGSNHAILQTLVHSIEPDDIPLPCCVPTKMSPI 334

  Fly   673 EILHVDENHSDKLKISTWSDMQVVECAC 700
            .:|..|.|  |.:.:..:.:|.|.||.|
 Frog   335 SMLFYDNN--DNVVLRHYENMAVDECGC 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 16/68 (24%)
TGF_beta 599..700 CDD:278448 32/106 (30%)
gdf1NP_001016819.1 TGFb_propeptide <108..205 CDD:366248 24/102 (24%)
TGF_beta_GDF1_3_like 260..361 CDD:381642 33/106 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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