DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mav and gbb

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster


Alignment Length:530 Identity:121/530 - (22%)
Similarity:201/530 - (37%) Gaps:143/530 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 VQWINTVP--IQSRQTRETRDIGLETKRHSKPSKRVDETRLKHLVLKGLGIKKLPDMRKVNISQA 277
            :.::.|.|  :::.|:....|.|.:.....:.....|:..:.:.:|:.|||.:.|    .::|..
  Fly    24 LMFVATTPPAVEATQSGIYIDNGKDQTIMHRVLSEDDKLDVSYEILEFLGIAERP----THLSSH 84

  Fly   278 EYSSKYIEYLSRLRSNQEKGNSYFNNFMGASFTRDLHFLSITTNGFN--DISNKRLRHRRSLKKI 340
            :.|         ||.:..|            |..|::.......|.:  |..:...|..||.:..
  Fly    85 QLS---------LRKSAPK------------FLLDVYHRITAEEGLSDQDEDDDYERGHRSRRSA 128

  Fly   341 NRLNQNPKKHQNY-GDLLRGEQDTMNILLHFPLTNAQDANFHHDKIDEANVRLMLLYSSSLATNF 404
            :......::.:|: .||.:...|..:|::.|       .|..|..:||                .
  Fly   129 DLEEDEGEQQKNFITDLDKRAIDESDIIMTF-------LNKRHHNVDE----------------L 170

  Fly   405 RRGPGSRKNKISQISGNDNIERHCNFGDVNLNQSNKNSSQQLTLKVYQ------LLSANRRRKIT 463
            |...|.|.                 :.||: |..|.|......|::||      .|:|||...||
  Fly   171 RHEHGRRL-----------------WFDVS-NVPNDNYLVMAELRIYQNANEGKWLTANREFTIT 217

  Fly   464 SRKIEFGNVGFQETR------------TQWIEFDVTKAVRSWLNKSHENLGIEIQCDKCKSIGAR 516
            ...|..|.:| |.|.            ..|:|.:||:.:..||.||.:|.||        .|||.
  Fly   218 VYAIGTGTLG-QHTMEPLSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGI--------YIGAH 273

  Fly   517 ILSDFSPSTPPRSTASSDEHLNLMPVLNIIGHGTLNSQQHGDADIHQIMLTNNRSDQYV------ 575
            .:     :.|.|.....|        :.:|       .:..|.:....|:...|..:.:      
  Fly   274 AV-----NRPDREVKLDD--------IGLI-------HRKVDDEFQPFMIGFFRGPELIKATAHS 318

  Fly   576 -HHRS----NHDSTWRKDKWTNNCYKLH----QRCCRNQ-LDVAFKSIKGFEFILQPKVFDAGYC 630
             ||||    :|....:|....||...|.    .|.|:.| |.:.||.:...::|:.|:.:.|.||
  Fly   319 SHHRSKRSASHPRKRKKSVSPNNVPLLEPMESTRSCQMQTLYIDFKDLGWHDWIIAPEGYGAFYC 383

  Fly   631 HGRCP---PRHNPAHHHALLQSLIWQEDHKRAPRPCCTPSKLEMLEIL-HV-DENHSDKLKISTW 690
            .|.|.   ..|..|.:||::|:|:...:.|:.|:|||.|::|..|.:| |: |||    :.:..:
  Fly   384 SGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLNDEN----VNLKKY 444

  Fly   691 SDMQVVECAC 700
            .:|.|..|.|
  Fly   445 RNMIVKSCGC 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 25/81 (31%)
TGF_beta 599..700 CDD:278448 35/106 (33%)
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 72/355 (20%)
TGFB 354..455 CDD:214556 35/105 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466520
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.