DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mav and tgfb3

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_919367.2 Gene:tgfb3 / 369195 ZFINID:ZDB-GENE-030723-4 Length:410 Species:Danio rerio


Alignment Length:445 Identity:104/445 - (23%)
Similarity:165/445 - (37%) Gaps:100/445 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 SFTRDLHFLSITTNGFNDISNKRLRHRRS--LKKINRLNQNPKKHQNYG------DLLRGEQDTM 364
            |.|..|...:.||...::|..||:...|.  |.|: ||...|   |..|      .:|.....|.
Zfish    15 SVTMSLSLSTCTTVDIDNIKKKRVEAIRGQILSKL-RLTSPP---QTLGPSQVPYQVLALYNSTR 75

  Fly   365 NILLHFPLTNAQDANFHHDKIDEANVRLMLLYSSSLATNFRRGPGSRKNKISQISGN--DNIERH 427
            ::|..|    .:|   .|....:.|.... .|:..:            :|.:.|.|:  :|...:
Zfish    76 DLLDGF----GKD---RHQSCGQDNTETE-YYAKEI------------HKFNMIQGSPENNDLPY 120

  Fly   428 CNFG--------DVNLNQSN-----------------KNSSQQLTLKVYQLLSAN----RRRKIT 463
            |..|        ||::.:.|                 ..|..:..:::||:|..:    ::|.|.
Zfish   121 CPKGITSKVFRFDVSIMEKNASNLFRAEFRALRMPNLSTSRTEQRIELYQILRPDEHIGKQRYIG 185

  Fly   464 SRKIEFGNVGFQETRTQWIEFDVTKAVRSWLNKSHENLGIEIQCDKCKSIGARILSDFSPSTPPR 528
            .:.:..|..      .:|:.||||:.||.||.....|||:||             |...|....|
Zfish   186 RKNVMIGGT------DEWVSFDVTETVREWLTNRATNLGLEI-------------SVHCPCHTFR 231

  Fly   529 STASSDEHLNLMPVLNIIGHGTLNSQQHGDADIHQIMLTNNRSDQYVH--------HRSNHDSTW 585
            ......|::|  ..|.:...| ::.:..|........|...:.....|        ||.:...|.
Zfish   232 PNGEIIENVN--EALEVKFRG-MDVEDDGPIRSDMGRLKKPKEQNLPHLILMMLPPHRLDVLPTS 293

  Fly   586 RKDKW---TNNCY-KLHQRCCRNQLDVAFKSIKGFEFILQPKVFDAGYCHGRCPPRHNPAHHHAL 646
            |:.|.   |..|: ...:.||..:|.:.|:...|:.:|.:||.:.|.:|.|.||...:....|:.
Zfish   294 RRRKRALDTKYCFSNYEENCCVRKLYIDFRQDLGWRWIHEPKGYHANFCSGPCPYLRSADTTHSS 358

  Fly   647 LQSLIWQEDHKRAPRPCCTPSKLEMLEILHVDENHSDKLKISTWSDMQVVECACS 701
            |.||....:.:.:..|||.|..||.|.||:......   |:...|:|.|..|.||
Zfish   359 LLSLYNTLNPEASASPCCVPQDLEPLTILYYVGRTP---KVEQLSNMIVKSCKCS 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 20/67 (30%)
TGF_beta 599..700 CDD:278448 31/100 (31%)
tgfb3NP_919367.2 TGFb_propeptide 22..228 CDD:279078 53/248 (21%)
TGF_beta 311..409 CDD:278448 31/100 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1343
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.