DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mav and Gdf1

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_001037705.1 Gene:Gdf1 / 306351 RGDID:1304678 Length:357 Species:Rattus norvegicus


Alignment Length:112 Identity:35/112 - (31%)
Similarity:56/112 - (50%) Gaps:18/112 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   601 CCRNQLDVAFKSIKGFEFILQPKVFDAGYCHGRCP-------PRHNPAHHHALLQSLIWQEDHKR 658
            |...:|.|:|:.:....:::.|:.|.|.:|.|.|.       |...||.:||:|::|:    |..
  Rat   251 CRTRRLHVSFREVGWHRWVIAPRGFLANFCQGTCALPETLRGPGGPPALNHAVLRALM----HAA 311

  Fly   659 AP-----RPCCTPSKLEMLEILHVDENHSDKLKISTWSDMQVVECAC 700
            ||     .|||.|.:|..:.:|..|  :||.:.:..:.||.|.||.|
  Rat   312 APTPGVGSPCCVPERLSPISVLFFD--NSDNVVLRHYEDMVVDECGC 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078
TGF_beta 599..700 CDD:278448 34/110 (31%)
Gdf1NP_001037705.1 TGFB 251..357 CDD:214556 35/112 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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