DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mav and gdf6b

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_571062.1 Gene:gdf6b / 30180 ZFINID:ZDB-GENE-980526-442 Length:412 Species:Danio rerio


Alignment Length:526 Identity:105/526 - (19%)
Similarity:185/526 - (35%) Gaps:169/526 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 LSVQWINTV-PIQSRQTRETRDIGLETKRHSKPSKRVDETRLKHLVLKGLGIKKLPDMR-KVNIS 275
            |.||.:|.: |..||..:.::.:..|..|.:|..|.|    |...:|.|       |:: :..|.
Zfish    17 LGVQSMNPLFPSASRGMKVSKSVPAEGNRRAKYGKNV----LSASLLSG-------DIQSRRAIK 70

  Fly   276 QAEYSSKYIEYLSRLRSNQEK---GNSYFNNFMGASFTRDLHFLSITTNGFNDISNKRLRHRRSL 337
            .|.....|:..:.:..|..||   ..|:|.:...|:     ...|....|.:|..|..|..::.|
Zfish    71 DAIEPHDYMISIYKTFSAAEKLGLNASFFRSSKAAN-----TITSFVDEGQDDHLNSPLWRQKYL 130

  Fly   338 KKINRLNQNPKKHQNYGDLLRGEQDTMNILLHFPLTNAQDANFHHDKIDEANVRLMLLYSSSLAT 402
            ..::.|::|                 :.||                                   
Zfish   131 FDVSTLSEN-----------------VEIL----------------------------------- 143

  Fly   403 NFRRGPGSRKNKISQISGNDNIERHCNFGDVNLNQSNKNSSQQLTLKVYQLLSANRRRKITSRKI 467
                  |:.....::|||:   .|....|.|.:                ||||......:.|:.:
Zfish   144 ------GAELRIYTKISGS---FRASETGPVEI----------------QLLSCQSHTVLDSQTL 183

  Fly   468 EFGNVGFQETRTQWIEFDVTKAVRSWLNKSHEN-LGIEIQCDKCKSIGARILSDFSPSTPPRSTA 531
            :..:.    .:.:|..|||.:..:...:.||.| ..:|:                      |:|.
Zfish   184 DLEDA----HKPKWEVFDVWEIFKERQHHSHGNRFCLEL----------------------RATL 222

  Fly   532 SSDE-HLNLMPVLNIIGHGTLNSQQHGDADIHQ---IMLTNNRSDQYVHH--------------- 577
            .:.| .::|.         .|...:||...:.:   ::.|.::..|.:.:               
Zfish   223 DNPEREIDLQ---------YLGFHRHGRPQLKKAILVVFTRSKKRQSLFYEKREKIKLWGLDSIG 278

  Fly   578 --RSNHDSTWRKDKWT---NNCYKLH-----QRCCRNQLDVAFKSIKGFEFILQPKVFDAGYCHG 632
              |.:|..| |:.:.|   |...|.|     .||.:..|.|.|:.:...::::.|..::|.:|.|
Zfish   279 KERRSHSKT-RRSRRTALPNRHGKRHGKKSKSRCSKKPLHVNFRELGWDDWVIAPLDYEAYHCEG 342

  Fly   633 RC--PPR-HNPAHHHALLQSLIWQEDHKRAPRPCCTPSKLEMLEILHVDENHSDKLKISTWSDMQ 694
            .|  |.| |....:||::|:|:...:....|..||.||||..:.||::|..::...|  .:.||.
Zfish   343 MCDFPLRSHLEPTNHAIIQTLMNSMNPSNMPPSCCVPSKLSPISILYIDAGNNVVYK--QYEDMV 405

  Fly   695 VVECAC 700
            |..|.|
Zfish   406 VESCGC 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 13/64 (20%)
TGF_beta 599..700 CDD:278448 32/103 (31%)
gdf6bNP_571062.1 TGFb_propeptide 77..252 CDD:279078 44/291 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..311 8/31 (26%)
TGF_beta 315..411 CDD:278448 30/97 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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