DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mav and lft1

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_571035.1 Gene:lft1 / 30145 ZFINID:ZDB-GENE-990630-10 Length:358 Species:Danio rerio


Alignment Length:471 Identity:92/471 - (19%)
Similarity:158/471 - (33%) Gaps:167/471 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 LKHLVLKGLGIKKLPDMRKVNISQAEYSSKYIEYLSRLRSNQEKGNSYFNNFMGASFTRDLHFLS 317
            :|..:||.||:.::|.:.|                                       |||..|.
Zfish    26 MKDALLKKLGLNEIPQIHK---------------------------------------RDLENLV 51

  Fly   318 ITTNGFND-ISNKRLRHRRSLKKINRLNQNPKKHQNYGDLLRG------------EQDTMNILLH 369
            |.|:..|. ||..:|.|.|..:.:..|          ..:|||            ..||....:.
Zfish    52 IPTHVKNKYISMLKLHHSRKRRSLPSL----------AGILRGIPGNADISGEFVYSDTTRQRVV 106

  Fly   370 FPLTNAQDANFHHDKIDEANVRLMLLYSSSLATNFRRGPGSRKNKISQISGNDNIERHCNFGDVN 434
            |.:|:....|   .::..|.::|           :::.|  .|..|.:..|:    |..|...|:
Zfish   107 FEMTSRIPEN---SEVTMAELKL-----------YKKAP--HKRSIPERKGH----RPVNNARVS 151

  Fly   435 LN--QSNKNSSQQLTLKVYQLLSANRRRKITSRKIEFGNVGFQETRTQWIEFDVTKAVRSWLNKS 497
            :.  :..|:.|             ||...:.||.|.....|       |..||||:||:.|....
Zfish   152 IYWVEPQKDGS-------------NRTSLVDSRLIPIHETG-------WKSFDVTQAVQYWSRSR 196

  Fly   498 HE---NLGIEIQCDKCKSIGARILS--DFSPSTPPRSTASSDEHLNLMPVLNIIGHGTLNSQQHG 557
            .|   :|.:.|:.::..|..|.:..  .|:...|..:|....| |.|.         |||.::.|
Zfish   197 MEMPMHLEVWIEGERPGSYAAEMAKCVHFTTQDPDDNTLGKPE-LVLY---------TLNLEEFG 251

  Fly   558 DADIHQIMLTNNRSDQYVHHRSNHDSTWRKDKWTNNCYKLHQRCCRNQLDVAFKSIKGFEF-ILQ 621
                                 |:.|....||:         :.|||.|..:.|:::...:: |::
Zfish   252 ---------------------SSGDCENNKDR---------EMCCREQYFINFRALTWTQYWIIE 286

  Fly   622 PKVFDAGYCHGRC-PPRHNPAHHHALLQSLIWQEDHKRAPRPCCTPSKLEMLEILHVDENHSDKL 685
            |..:.|..|.|.| .|:.|..:                ..|.|.......:..:..|.:....::
Zfish   287 PSGYQAFRCKGGCRQPKRNYGY----------------GERKCAVVESAPLPMMYLVKKGDYTEI 335

  Fly   686 KISTWSDMQVVECACS 701
            :::.:.:|.|.:|.|:
Zfish   336 EVAEFPNMIVEKCGCA 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 17/66 (26%)
TGF_beta 599..700 CDD:278448 19/102 (19%)
lft1NP_571035.1 TGFb_propeptide 24..>192 CDD:366248 52/254 (20%)
TGF_beta_LEFTY1_2 265..350 CDD:381636 19/100 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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