DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mav and gdf3

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_571023.1 Gene:gdf3 / 30125 ZFINID:ZDB-GENE-980526-389 Length:355 Species:Danio rerio


Alignment Length:309 Identity:68/309 - (22%)
Similarity:120/309 - (38%) Gaps:87/309 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   424 IERHCNFGDVNLNQSNKNSSQQLTLK----------------VYQLLSA--------NRRRKITS 464
            :.:|..|....|.:..:.|..||.:|                :|::|..        :.|:.:.|
Zfish   101 VRKHLFFNMSVLEEVEQLSLAQLEMKFKQDLLLLGPHVFSVDLYRVLKTTLKGVTHESSRKLLQS 165

  Fly   465 RKIEFGNVGFQETRTQWIEFDVTKAVRSWLNKSHENLGIEIQCDKCKSIGARILSDFSPSTPPRS 529
            :.:..|       ....:..::|...:|| .|..:|.|::::                       
Zfish   166 QTLSPG-------AHASVLVNLTNLAQSW-RKPEKNFGMQLE----------------------- 199

  Fly   530 TASSDEHLNLMPVLNIIGHGTLNSQQHGDA-----DIHQIMLTNNRSDQYVHHRSNHDSTWRKDK 589
                   |.:|       |  ||:..|..|     |||..::..:.:......|....:::....
Zfish   200 -------LQVM-------H--LNNMLHDHAYVQIPDIHATLVVVSLNPLQCRSRRKRSASYYLPV 248

  Fly   590 WTNNCYKLHQRCCRNQLDVAFKSIKGFEFILQPKVFDAGYCHGRCP-PRHNPAH--HHALLQSLI 651
            ..:|.      |...:|.:.||.:...::|:.|:.:.|.||||.|| |.....:  :||:||:|:
Zfish   249 TPSNV------CKPRRLYIDFKDVGWQDWIIAPQGYLANYCHGECPFPLSESLNGTNHAILQTLV 307

  Fly   652 WQEDHKRAPRPCCTPSKLEMLEILHVDENHSDKLKISTWSDMQVVECAC 700
            ...|.|..|:|||.|.||..:.:|:.|.|  |.:.:..:.||.|.||.|
Zfish   308 HSFDPKGTPQPCCVPIKLSPISMLYYDNN--DNVVLRHYEDMVVDECGC 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 15/87 (17%)
TGF_beta 599..700 CDD:278448 37/103 (36%)
gdf3NP_571023.1 TGFb_propeptide 27..200 CDD:279078 18/136 (13%)
TGFB 254..355 CDD:214556 38/103 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.