DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mav and Gdf6

DIOPT Version :9

Sequence 1:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_001013056.1 Gene:Gdf6 / 252834 RGDID:620104 Length:452 Species:Rattus norvegicus


Alignment Length:584 Identity:124/584 - (21%)
Similarity:196/584 - (33%) Gaps:184/584 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 TPKMGLKNVFESFSKQSRDSIYNASSNKYSLINVSQSKNFPQLFNKKLSVQWINTVPIQSRQTRE 230
            ||::.|..:|.............||.:..|...:..:|:.......|:     ...|.:|.:.| 
  Rat     3 TPRVLLWAIFLISFLWDLPGFQQASISSSSSTELDSTKDVENRKGGKM-----QRTPQESAEGR- 61

  Fly   231 TRDIGLETKRHSKPSKRVDETRLKHLVLKGLGIKKLPDMRKVNISQAEYS-SKYIEYLSRLRSNQ 294
                   |.:..:|  |.:|.|.:   |.|..:.:.|..|...:...||. |.|..|     |..
  Rat    62 -------TPKEHRP--RPNELRRR---LPGQSLGQEPPGRGPRVVPHEYMLSIYRTY-----SIA 109

  Fly   295 EK---GNSYFNNFMGASFTRDLHFLSITTNGFNDISNKRLRHRRSLKKINRLNQNPKKHQNYGDL 356
            ||   ..|:|.:...|:     ...|....|.:|:|:..||.::.|..::.|:.   |.:..|..
  Rat   110 EKLGINASFFQSSKSAN-----TITSFVDRGLDDLSHTPLRRQKYLFDVSTLSD---KEELVGAE 166

  Fly   357 LR----------GEQDTMNILLHFPLTNAQDANFHHDKIDEANVRLMLLYSSSLATNFRRGPGS- 410
            ||          |.|.....|..||..:.                 :||.|.:|..   :||.. 
  Rat   167 LRLYRQAPPTPWGPQTRPLHLQLFPCLSP-----------------LLLDSRTLDP---QGPTEA 211

  Fly   411 -----------RKNKISQISGNDNIERHCNFGDVNLNQSNKNSSQQLTLKVYQLLSANRRRKITS 464
                       |.....|:.    :|....:|:::...|                .|..|....|
  Rat   212 GWEVFDVWQVLRPQPWKQLC----LELRAVWGELDARDS----------------GARPRGPQQS 256

  Fly   465 RKIEFGNVGF------QETRTQWIEFDVTKAVRSWL-NKSHENLGIEIQCDKCKSIGARILSDFS 522
            ..::..::||      .:.|...:.|  |::.|..| .:.||.||      ..::.||. .|..:
  Rat   257 PPLDLRSLGFGRRVRPPQERALLVVF--TRSQRKNLFTEMHEQLG------SAEAAGAE-GSWPA 312

  Fly   523 PSTPP-------------RSTASSDEHLNLMPVLNIIGHGTLNSQQHGDADIHQIMLTNNRSDQY 574
            ||..|             |.||.|..|                .::||.                
  Rat   313 PSGAPDAGSWLPSPGRRRRRTALSSRH----------------GKRHGK---------------- 345

  Fly   575 VHHRSNHDSTWRKDKWTNNCYKLHQRCCRNQLDVAFKSIKGFEFILQPKVFDAGYCHGRC--PPR 637
                                 |...||.|..|.|.||.:...::|:.|..::|.:|.|.|  |.|
  Rat   346 ---------------------KSRLRCSRKPLHVNFKELGWDDWIIAPLEYEAYHCEGVCDFPLR 389

  Fly   638 -HNPAHHHALLQSLIWQEDHKRAPRPCCTPSKLEMLEILHVDENHSDKLKISTWSDMQVVECAC 700
             |....:||::|:|:...|....|..||.|:||..:.||::|..::...|  .:.||.|..|.|
  Rat   390 SHLEPTNHAIIQTLMNSMDPGSTPPSCCVPTKLTPISILYIDAGNNVVYK--QYEDMVVESCGC 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 14/70 (20%)
TGF_beta 599..700 CDD:278448 35/103 (34%)
Gdf6NP_001013056.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..93 15/81 (19%)
TGFb_propeptide 66..282 CDD:279078 53/273 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 244..267 5/38 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 301..348 14/100 (14%)
TGF_beta 350..451 CDD:278448 35/102 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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