DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Eph and TMK1

DIOPT Version :9

Sequence 1:NP_524625.3 Gene:Eph / 43803 FlyBaseID:FBgn0025936 Length:1096 Species:Drosophila melanogaster
Sequence 2:NP_176789.1 Gene:TMK1 / 842930 AraportID:AT1G66150 Length:942 Species:Arabidopsis thaliana


Alignment Length:677 Identity:140/677 - (20%)
Similarity:255/677 - (37%) Gaps:198/677 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   452 NETKITLTNLEPVTTYTVQIHAINSVSHINEFKRHSNESSLVAVSDIVFSNTSLLNIPLDLN--- 513
            |.|.|:|..:|...|.:.:..||.|:..|           ::.::::    |.:  ||.:|.   
plant   363 NITVISLEKMELTGTISPEFGAIKSLQRI-----------ILGINNL----TGM--IPQELTTLP 410

  Fly   514 EVKTGQAEIVFTTESVLLSTV--FNLRILAITNKDADLEWDKPVQSDFPLEFYEVRWFPKVELDA 576
            .:||     :..:.:.|...|  |...::..||.:.|:..|                        
plant   411 NLKT-----LDVSSNKLFGKVPGFRSNVVVNTNGNPDIGKD------------------------ 446

  Fly   577 INKSALNTKETKAHIVGLLENTEYGFQVRCKTNNGFGSYSNMIYAQTLQSVGSV----YDDSVQI 637
              ||:|::..:.:                  .:.|.||..|          |..    ...|..|
plant   447 --KSSLSSPGSSS------------------PSGGSGSGIN----------GDKDRRGMKSSTFI 481

  Fly   638 RFIAGAIVTGVL--FLVIFIIATVYFMRSKHQDDLDKKSTNHLPLPLDYASNEVNSMDTTPIVKK 700
            ..|.|:::.|:|  ||:..::...|..|.|...  ..:|:|.:.:...::.::..|:..|.....
plant   482 GIIVGSVLGGLLSIFLIGLLVFCWYKKRQKRFS--GSESSNAVVVHPRHSGSDNESVKITVAGSS 544

  Fly   701 LHLNVTTPLFGNSRSYVDPHTYE--DPNQAIR--------EFAREIDANYITIEAIIGGGEFGDV 755
            :.:.      |.|.:|..|.|.|  |..|.:.        :..|.:..|: :.:.|:|.|.||.|
plant   545 VSVG------GISDTYTLPGTSEVGDNIQMVEAGNMLISIQVLRSVTNNF-SSDNILGSGGFGVV 602

  Fly   756 CRGRLKIPPNFVQDIDVAIKTLKPG-SSEKARCDFLTEASIMGQFDHPNVIYLQGVVTRSNPVMI 819
            .:|.|.      ....:|:|.::.| .:.|...:|.:|.:::.:..|.:::.|.|.....|..::
plant   603 YKGELH------DGTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLL 661

  Fly   820 ITEYMENGSLD--TFLRVNDGKFQTL--QLIVMLRGIASGMSY---LSDMNYVHRDLAARNVLVN 877
            :.|||..|:|.  .|....:|....|  |.:.:...:|.|:.|   |:..:::||||...|:|:.
plant   662 VYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLG 726

  Fly   878 AQLICKIADFGLSREIENASDAYTTR-GGKIPVRWTAPEAIAFRKFTSASDVWSYGVVLWE---- 937
            ..:..|:|||||.|.......:..|| .|..  .:.|||.....:.|:..||:|:||:|.|    
plant   727 DDMRAKVADFGLVRLAPEGKGSIETRIAGTF--GYLAPEYAVTGRVTTKVDVYSFGVILMELITG 789

  Fly   938 --------------VMSYGERPYWNWS-------------NQDVIKSI------------EKGYR 963
                          ::|:.:|.|.|..             :::.:.|:            .:.|:
plant   790 RKSLDESQPEESIHLVSWFKRMYINKEASFKKAIDTTIDLDEETLASVHTVAELAGHCCAREPYQ 854

  Fly   964 LP----------------APMD-CPEALYQLMLDC--------WQKQRTH---RPTFASIVSTLD 1000
            .|                .|.| .||.:|.:.||.        ||.....   ..:.:|::.:||
plant   855 RPDMGHAVNILSSLVELWKPSDQNPEDIYGIDLDMSLPQALKKWQAYEGRSDLESSTSSLLPSLD 919

  Fly  1001 NLARQPQSLLTTRPSPESDGNHILDGQ 1027
            |    .|..:.|||...::....:||:
plant   920 N----TQMSIPTRPYGFAESFTSVDGR 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EphNP_524625.3 EphR_LBD 85..260 CDD:198439
FN3 387..476 CDD:238020 8/23 (35%)
FN3 536..623 CDD:238020 11/86 (13%)
EphA2_TM 644..736 CDD:291255 20/103 (19%)
PTKc_EphR 736..1002 CDD:270629 78/345 (23%)
Pkinase_Tyr 741..999 CDD:285015 75/337 (22%)
SAM_1 1033..1092 CDD:278937
SAM 1039..1092 CDD:197735
TMK1NP_176789.1 PLN00113 28..867 CDD:215061 121/596 (20%)
leucine-rich repeat 90..112 CDD:275380
leucine-rich repeat 113..136 CDD:275380
leucine-rich repeat 137..161 CDD:275380
leucine-rich repeat 162..187 CDD:275380
leucine-rich repeat 188..210 CDD:275380
leucine-rich repeat 211..233 CDD:275380
leucine-rich repeat 234..256 CDD:275380
leucine-rich repeat 257..280 CDD:275380
leucine-rich repeat 341..387 CDD:275380 8/23 (35%)
leucine-rich repeat 388..411 CDD:275380 5/39 (13%)
STKc_IRAK 594..868 CDD:270968 64/281 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1804
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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