DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eph and SRF3

DIOPT Version :9

Sequence 1:NP_524625.3 Gene:Eph / 43803 FlyBaseID:FBgn0025936 Length:1096 Species:Drosophila melanogaster
Sequence 2:NP_001329389.1 Gene:SRF3 / 827941 AraportID:AT4G03390 Length:776 Species:Arabidopsis thaliana


Alignment Length:700 Identity:140/700 - (20%)
Similarity:256/700 - (36%) Gaps:184/700 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 FNETKI--TLTNLEPVT---------TYTVQI-HAINSVSHINEFKRHSNESSLVAVSDIVFSN- 502
            |:..:|  ::.:..|||         .:|..| .::.::|.:|:..  .|::.|......||.| 
plant   105 FSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESLGTLSFLNDMS--LNDNLLSGELPDVFQNL 167

  Fly   503 TSLLNIPLDLNEVKTGQAEIVFTTESVLLSTVFNLRILAITNKDADLEWDKPVQSDFPLEFYEVR 567
            ..|:|:.:..|.:   ...:..:.|::|  |:..||:     ::..|.....|....||:...:.
plant   168 VGLINLDISSNNI---SGTLPPSMENLL--TLTTLRV-----QNNQLSGTLDVLQGLPLQDLNIE 222

  Fly   568 -------------WFPKV--ELDAINKSALNTKETKAHIVGLLENTE-------------YGFQV 604
                         ..||.  |.:..|.:.:|:..|...:...|..|:             ...:.
plant   223 NNLFSGPIPDKLLSIPKFLHEGNPFNATMINSTSTAPSLSPSLSPTKPAPTRPFSGVPPPPNERN 287

  Fly   605 RCKTNNGFGSYSNMIYAQTLQSVGSVYDDSVQIRFIAGAIVTGVLFLVIFIIATVYFMRSKHQDD 669
            |.|..:| .|.|....::..:...|.:...:.:...||.:|..:|.|.|.::......|.:|.:.
plant   288 RGKVADG-PSDSEGSSSENSKGKNSSHTKKIILIAFAGVLVFIILVLAILLLLPKCARRREHANR 351

  Fly   670 LDKKSTNHLPLPLDYASNEVNSMDT-TPIVKKLHLNVTTPLFGNS---------RSYVDPHTYED 724
            :.|..    .:..|..|.| |:::. ||::         |..|.|         ::..:|....|
plant   352 VFKPH----QVGADRGSRE-NALENGTPVL---------PPPGRSEKVQREPFKKAGEEPKVLHD 402

  Fly   725 ------PNQAIREFAREIDANY--------------------ITI-------------------- 743
                  |....|:.:::||.:.                    :|:                    
plant   403 LERLRRPAPISRQESQDIDFSMLMPPPPPPPPPPPPPPLDEKVTVMPIISPERPVKKTSPKRLPL 467

  Fly   744 --------------------EAIIGGGEFGDVCRGRLKIPPN---FVQDIDVAIKTL-KPGSSEK 784
                                |.:||.|..|.|.|.||   ||   |      |:|.| |..|.::
plant   468 TSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARL---PNGKLF------AVKKLDKRASEQQ 523

  Fly   785 ARCDFLTEASIMGQFDHPNVIYLQGVVTRSNPVMIITEYMENGSLDTFLRVND---GKFQTLQLI 846
            ...:|:...:.:....|.|::.|.|.....:..:::.||..||:|...|..:|   .|......:
plant   524 QDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRV 588

  Fly   847 VMLRGIASGMSYLSDM---NYVHRDLAARNVLVNAQLICKIADFGLSREIENASDAYTTRGGKIP 908
            .|..|.|..:.||.::   ..:||:..:.|||::..|...::|.||:..|.:.|.:..:......
plant   589 SMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAA 653

  Fly   909 VRWTAPEAIAFRK--FTSASDVWSYGVVLWEV----MSY------GERPYWNWS-----NQDVI- 955
            ..:.|||   |..  :|..|||:|:|||:.|:    |||      ||:....|:     :.|.: 
plant   654 YGYGAPE---FDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALG 715

  Fly   956 KSIEKGYRLPAPMDCPEALYQLMLDCWQKQRTHRPTFASIVSTLDNLARQ 1005
            |.::.......|.........::..|.|.:...||..:.:|..|.::.|:
plant   716 KMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDLLDMIRR 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EphNP_524625.3 EphR_LBD 85..260 CDD:198439
FN3 387..476 CDD:238020 7/36 (19%)
FN3 536..623 CDD:238020 19/114 (17%)
EphA2_TM 644..736 CDD:291255 20/107 (19%)
PTKc_EphR 736..1002 CDD:270629 77/353 (22%)
Pkinase_Tyr 741..999 CDD:285015 74/325 (23%)
SAM_1 1033..1092 CDD:278937
SAM 1039..1092 CDD:197735
SRF3NP_001329389.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1804
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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