DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Eph and SRF4

DIOPT Version :9

Sequence 1:NP_524625.3 Gene:Eph / 43803 FlyBaseID:FBgn0025936 Length:1096 Species:Drosophila melanogaster
Sequence 2:NP_566444.4 Gene:SRF4 / 820494 AraportID:AT3G13065 Length:687 Species:Arabidopsis thaliana


Alignment Length:619 Identity:128/619 - (20%)
Similarity:242/619 - (39%) Gaps:150/619 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   467 YTVQIHAINSVSHINEFKRHSNESSLVAVSDIVFSNTSLLNIPLDLNEVKTGQAEIVFTTESVLL 531
            |:|.:  :|.:|::|..:.:.|..    :||:......|..|.|..|:: ||:....|       
plant   135 YSVSL--MNDLSYLNLGRNNLNGE----LSDMFQKLPKLETIDLSSNQL-TGKLPQSF------- 185

  Fly   532 STVFNLRILAITNKDADLEWDKPVQSDFPLEFYEVRWFPKV-ELDAINKSALNTKETKAHIVGLL 595
            :.:..|:.|.:.            ::.|......:|..|:: :::..|.........:...:|.|
plant   186 ANLTGLKTLHLQ------------ENQFKGSINALRDLPQIDDVNVANNQFTGWIPNELKNIGNL 238

  Fly   596 E----------------NTEYGFQVRCKTNNGFGSYSNMIYAQTLQSVGSVYDDSVQIRFIAGAI 644
            |                .|.:   :...::.|.|..|..:....:.:|.|:              
plant   239 ETGGNKWSSGRAPSPPPGTRH---IDRNSSGGGGGSSKALTLGVIIAVSSI-------------- 286

  Fly   645 VTGVLFLVIFIIATVYFMRSKHQDDL-----DKKSTNH-LPLPLDYASNEV-------------- 689
              |.|.|...:||.:  .|.|:.:|.     |:|.||. .||....:|..:              
plant   287 --GGLILFAGLIALI--SRRKNSNDSSHFFDDEKGTNRSKPLFTPQSSQMLQFDNMEEFKNQKTV 347

  Fly   690 ---NSMDTTPIVKK-----------LHLNVTTPLFG----NSRSYVDPHTYEDPNQAIREFA--- 733
               .|::|.|.||:           .||..:|.:..    :|.|...|.|     :.::.|:   
plant   348 DSNTSLETKPSVKRTSSVSFKNSPTFHLIPSTQVAATPDRSSTSQDSPDT-----RGVKAFSLAD 407

  Fly   734 REIDANYITIEAIIGGGEFGDVCRGRLKIPPNF-VQDIDVAIKTLKPGSSEKARCDFLTEASIMG 797
            .:..|:..:...::|.|..|.|.:.:.:....| |::||.::  |..|:.|    :|....|.:.
plant   408 LQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSL--LGKGNPE----EFSHIVSSIS 466

  Fly   798 QFDHPNVIYLQGVVTRSNPVMIITEYMENGSLDTFLRVNDGKFQTLQLIVMLR---GIASGMSYL 859
            ...|.|:..|.|..:.....|::.||..:|||..||.::|...:.|.....:|   |.|..:.||
plant   467 SIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLHLSDDFSKPLTWNTRIRIALGTAKAIEYL 531

  Fly   860 SDM---NYVHRDLAARNVLVNAQLICKIADFGLSREIENASDAYTTRGGKIPVRWTAPEAIAFRK 921
            .:.   ..||:::.:.|:|::.:|..:::|:||:......|.       .:.|.:.|||......
plant   532 HETCSPPLVHKNIKSSNILLDNELNPRLSDYGLANFHHRTSQ-------NLGVGYNAPECTDPSA 589

  Fly   922 FTSASDVWSYGVVLWEVMSYGERPY-----------WNWSNQDVIKSIEKGYRLPAPMDC----P 971
            :|..|||:|:|||:.|::: |.:||           ..|:... :|.::....:..|..|    |
plant   590 YTQKSDVYSFGVVMLELLT-GRKPYDSGRPKAEQSLVRWAKPQ-LKDMDTLDEMVDPALCGLYAP 652

  Fly   972 EAL---YQLMLDCWQKQRTHRPTFASIVSTLDNL 1002
            |::   ..::..|...:...||..:::|..|..|
plant   653 ESVSSFADIVSICVMTEPGLRPPVSNVVEALKRL 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EphNP_524625.3 EphR_LBD 85..260 CDD:198439
FN3 387..476 CDD:238020 2/8 (25%)
FN3 536..623 CDD:238020 13/103 (13%)
EphA2_TM 644..736 CDD:291255 28/132 (21%)
PTKc_EphR 736..1002 CDD:270629 69/290 (24%)
Pkinase_Tyr 741..999 CDD:285015 67/282 (24%)
SAM_1 1033..1092 CDD:278937
SAM 1039..1092 CDD:197735
SRF4NP_566444.4 LRRNT_2 28..68 CDD:285463
LRR_RI <79..>235 CDD:238064 21/125 (17%)
leucine-rich repeat 97..118 CDD:275380
leucine-rich repeat 119..142 CDD:275380 2/8 (25%)
LRR_8 143..201 CDD:290566 14/81 (17%)
leucine-rich repeat 143..166 CDD:275380 5/26 (19%)
leucine-rich repeat 167..190 CDD:275380 7/30 (23%)
leucine-rich repeat 191..213 CDD:275380 4/33 (12%)
leucine-rich repeat 214..237 CDD:275380 1/22 (5%)
Pkinase 415..674 CDD:278497 64/273 (23%)
PKc_like 421..686 CDD:304357 68/279 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1804
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

Return to query results.
Submit another query.