DRSC/TRiP Functional Genomics Resources

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Protein Alignment Eph and ntrk3b

DIOPT Version :9

Sequence 1:NP_524625.3 Gene:Eph / 43803 FlyBaseID:FBgn0025936 Length:1096 Species:Drosophila melanogaster
Sequence 2:XP_002662799.4 Gene:ntrk3b / 798577 ZFINID:ZDB-GENE-010126-4 Length:818 Species:Danio rerio


Alignment Length:813 Identity:205/813 - (25%)
Similarity:330/813 - (40%) Gaps:196/813 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   351 CPPNSNASKTGSPFCKCA-SGFYRHPND-GRHMPCYSPPAAPTN------LTLLFVDQTSA-IIS 406
            |||.          |.|: :..|.:.:| |...|..:...:..|      :..||.:.||. |.:
Zfish    33 CPPT----------CSCSPTEIYCNKSDVGNFFPLLALQESAGNGSNNNDIEELFRNITSIHIEN 87

  Fly   407 WSAPAKNESFSSETNSKIYHSDIVYKIKCNI---------CSPNVVY-----NP----STDTFNE 453
            |:..........|..:.:....|   |.||:         .:|::.|     ||    |...|..
Zfish    88 WTGLQILRDVDMELYTGLQRLTI---INCNLRQIQPRAFSRNPHLRYINLSRNPLASLSWQLFQH 149

  Fly   454 TKITLTNLEPVT--------------------TYTVQIHAINSVSHINEFKRHSNESSLVAVSD- 497
            .::....||.|.                    .:|.|::..:..|.|      |..|..:|..| 
Zfish   150 LQLVELRLEGVVFDCGCKIRWIQLWRLRGEAGLHTQQLYCKDGASKI------SLRSMSIAHCDL 208

  Fly   498 ----IVFSNTSLL---NIPLD-----------------LNEVKTGQAEIVF-TTESVLLS----- 532
                :..||.::|   |:.|.                 |:.:.|.|:.:.. .|.|:.|:     
Zfish   209 QDISVAHSNLTVLEGGNVTLSCNGSGSPVPEVDWAVKGLHSINTHQSTVYLPNTHSINLTLVNVS 273

  Fly   533 --------TVFNLRILAITNKDAD---------LEWDKPVQSDFPLEFYEVRWFPKVELDAINKS 580
                    |..:..::.:.|....         |:.|:|.:.......:.||.||...|....|.
Zfish   274 RDDNGFVLTCISENVVGMNNVSLQLSVLFPPVILKLDEPERRHHTCIEFTVRGFPHPTLHWFYKG 338

  Fly   581 ---------ALNTKETKAHIVGLL--EN-TEY--GFQVRCKTNNGFGSYSNMIYAQTL------- 624
                     .:.....|.::.|.|  || |.|  |......||: .||.|..::...|       
Zfish   339 REILQSEYIRMEMDYYKDYLEGCLTFENPTHYDNGNYTLVATNS-LGSVSKTVFGHFLDPPFMED 402

  Fly   625 ----------QSVGSVYDDSVQIRFIAGAIVTGVLFL-VIFIIATVYFMRSKH---------QDD 669
                      :..|...:||..:....|....|.:|| |||::...|..|:|.         ..:
Zfish   403 DGIMEYTPPPEDEGKRPEDSFGMSIAVGLAGFGCVFLIVIFVLINKYSRRNKFGIKGPVAVISGE 467

  Fly   670 LDKKSTNHLPLPLDYASNEV---NSMDTTPIVKKLHLNVTTPLFGNSRSYVDPHTYEDPNQAIRE 731
            .|..|      ||.:.::.:   .|:|..|....:.:: ..|:..|.:.:...|....|.    .
Zfish   468 EDSAS------PLHHVNHGIVTPCSLDAGPDAVVIGMS-RIPVIENPQYFRHGHNCNKPT----T 521

  Fly   732 FAREIDANYITIEAIIGGGEFGDV----CRGRLKIPPNFVQDIDVAIKTLKPGSSEKARCDFLTE 792
            :.:.|....|.::..:|.|.||.|    |   ..:.|. ...:.||:|||| ..:..||.||..|
Zfish   522 YVQHIKRRDIVLKRELGEGAFGKVFLAEC---YNLSPT-KDKMLVAVKTLK-DPTLTARKDFQRE 581

  Fly   793 ASIMGQFDHPNVIYLQGVVTRSNPVMIITEYMENGSLDTFLRV---------------NDGKFQT 842
            |.::....|.:::...||....:|::::.|||::|.|:.|||.               ::|:...
Zfish   582 AELLTNLQHEHIVKFYGVCVDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPMQSNGELGL 646

  Fly   843 LQLIVMLRGIASGMSYLSDMNYVHRDLAARNVLVNAQLICKIADFGLSREIENASDAYTTRG-GK 906
            .|::.:...||:||.|||..::||||||.||.||...|:.||.|||:||:| .:||.|...| ..
Zfish   647 SQMLHIATQIAAGMVYLSSQHFVHRDLATRNCLVGNGLLVKIGDFGMSRDI-YSSDYYRVGGHTM 710

  Fly   907 IPVRWTAPEAIAFRKFTSASDVWSYGVVLWEVMSYGERPYWNWSNQDVIKSIEKGYRLPAPMDCP 971
            :|:||..||:|.:|||::.|||||:||::||:.:||::|:::.||.:||:.|.:|..|..|..||
Zfish   711 LPIRWMPPESIMYRKFSTESDVWSFGVIMWEIFTYGKQPWFHLSNNEVIECITQGRVLDRPRLCP 775

  Fly   972 EALYQLMLDCWQKQRTHRPTFASIVSTLDNLAR 1004
            :.:|.|||.|||::...|.....|...|..|.:
Zfish   776 KEVYDLMLGCWQREPQQRLNIKDIQKVLYALGK 808

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EphNP_524625.3 EphR_LBD 85..260 CDD:198439
FN3 387..476 CDD:238020 23/133 (17%)
FN3 536..623 CDD:238020 23/109 (21%)
EphA2_TM 644..736 CDD:291255 20/104 (19%)
PTKc_EphR 736..1002 CDD:270629 106/285 (37%)
Pkinase_Tyr 741..999 CDD:285015 104/277 (38%)
SAM_1 1033..1092 CDD:278937
SAM 1039..1092 CDD:197735
ntrk3bXP_002662799.4 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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