DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Eph and Epha4

DIOPT Version :9

Sequence 1:NP_524625.3 Gene:Eph / 43803 FlyBaseID:FBgn0025936 Length:1096 Species:Drosophila melanogaster
Sequence 2:NP_031962.2 Gene:Epha4 / 13838 MGIID:98277 Length:986 Species:Mus musculus


Alignment Length:1052 Identity:436/1052 - (41%)
Similarity:595/1052 - (56%) Gaps:144/1052 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 ADQVVLLDT-TREATLEWTRYPYGPQAQTPGWVEESFTDFVKGINWRSYVVCDVAYHNVNNWLWS 145
            |::|.|||: :.:..|.|...|.     ..||.|.|..| .|....|:|.||:|...:.||||.:
Mouse    28 ANEVTLLDSRSVQGELGWIASPL-----EGGWEEVSIMD-EKNTPIRTYQVCNVMEASQNNWLRT 86

  Fly   146 PFIDRGSANRLYIEIQFTIRDCSLFPGNALSCKETFSLLFYEFDAATREPPPWQTDSYRLIAR-- 208
            .:|.|..|.|:||||:||:|||:..||...:|||||:|.:||.|          .|..|.|..  
Mouse    87 DWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESD----------NDKERFIRESQ 141

  Fly   209 ------IAAGEGRFNQNSDVDI-------NTEVKSIA-VNKKGVYFAFRDQGACISVLAVKVYYI 259
                  |||.|. |.|   |||       |||::.:. ::|||.|.||:|.||||::::|:|:|.
Mouse   142 FGKIDTIAADES-FTQ---VDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYK 202

  Fly   260 TCPAVTENFAHFNETPTGREITIIEKQNGTCVDNAEPYETPTYLCKGDGKWTILTGGCRCKAGYE 324
            .||....|.|.|.:|.||.:.:.:.:..|:||:|:|..:.|...|..||:|.:..|.|.|.||:|
Mouse   203 KCPLTVRNLAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHE 267

  Fly   325 PNYTNKTCTECPLGTFKSPEV-TKCTPCPPNSNASKTGSPFCKCASGFYRHPNDGRHMPCYSPPA 388
            ..  |..|..|.:|.:|:... ..|..|||:|.:...|:..|.|..||:|..||...|||..||:
Mouse   268 EQ--NGECQACKIGYYKALSTDASCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPS 330

  Fly   389 APTNLTLLFVDQTSAIISWSAPAKNESFSSETNSKIYHSDIVYKI-----------KCNICSPNV 442
            ||.|| :..|::||..:.||:|       ..|..:   .||.|.:           ||..|...|
Mouse   331 APLNL-ISNVNETSVNLEWSSP-------QNTGGR---QDISYNVVCKKCGAGDPSKCRPCGSGV 384

  Fly   443 VYNPSTDTFNETKITLTNLEPVTTYTVQIHAINSVSHINEFKRHSNESSLVAVSDIVFSNTSLLN 507
            .|.|..:....|::::|:|...|.||.:|.|:|.||..|.    |.:.|:               
Mouse   385 HYTPQQNGLKTTRVSITDLLAHTNYTFEIWAVNGVSKYNP----SPDQSV--------------- 430

  Fly   508 IPLDLNEVKTGQAEIVFTTESVLLSTVFNLRILAITNKDADLEWDKPVQSDFPLEFYEVRWFPKV 572
                         .:..||.....|::..::...:|.....|.|.:|.:.:..:..|||:::.|.
Mouse   431 -------------SVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKD 482

  Fly   573 ELD----AINKSALNTKETKAHIVGLLENTEYGFQVRCKTNNGFGSYSNMIYAQT----LQSVGS 629
            :.:    .:..:|.||     .|.||...|.|.|.||.:|..|:|.:|..:...|    .:.:|.
Mouse   483 QNERSYRIVRTAARNT-----DIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGD 542

  Fly   630 VYDDSVQIRFIAGAIVTGVLFLVIFIIATVYFMRSKHQDDLDKKSTNHLPLPLDYASNEVNSMDT 694
            ..:.:|.:..::|::|..|:.:..|:|:......||.:.:.|::.                    
Mouse   543 GANSTVLLVSVSGSVVLVVILIAAFVISRRRSKYSKAKQEADEEK-------------------- 587

  Fly   695 TPIVKKLHLNVTTPLFGNSRSYVDPHTYEDPNQAIREFAREIDANYITIEAIIGGGEFGDVCRGR 759
                   |||      ...|:||||.||||||||:||||:||||:.|.||.:||.||||:||.||
Mouse   588 -------HLN------QGVRTYVDPFTYEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGR 639

  Fly   760 LKIPPNFVQDIDVAIKTLKPGSSEKARCDFLTEASIMGQFDHPNVIYLQGVVTRSNPVMIITEYM 824
            ||:|..  ::|.|||||||.|.::|.|.|||:||||||||||||:|:|:||||:..|||||||||
Mouse   640 LKVPGK--REICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYM 702

  Fly   825 ENGSLDTFLRVNDGKFQTLQLIVMLRGIASGMSYLSDMNYVHRDLAARNVLVNAQLICKIADFGL 889
            ||||||.|||.|||:|..:||:.|||||.|||.|||||:||||||||||:|||:.|:||::|||:
Mouse   703 ENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGM 767

  Fly   890 SREIENASD-AYTTRGGKIPVRWTAPEAIAFRKFTSASDVWSYGVVLWEVMSYGERPYWNWSNQD 953
            ||.:|:..: ||||||||||:|||||||||:|||||||||||||:|:||||||||||||:.||||
Mouse   768 SRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQD 832

  Fly   954 VIKSIEKGYRLPAPMDCPEALYQLMLDCWQKQRTHRPTFASIVSTLDNLARQPQSLLTTRPSPES 1018
            |||:||:|||||.|||||.||:|||||||||:|:.||.|..||:.||.|.|.|.||..|......
Mouse   833 VIKAIEEGYRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKLIRNPNSLKRTGSESSR 897

  Fly  1019 DGNHILDGQRGQ-NIFISTDLWLEHIKMSRYCHHFKEANLINAQQISRLTAQQLSDMGITLVGHQ 1082
            ....:||....: :..:|...||:.|||.||..:|..|.....:.:..::...|:.:|||.:.||
Mouse   898 PNTALLDPSSPEFSAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQ 962

  Fly  1083 KKILHQARQLDT 1094
            .|||...:.:.|
Mouse   963 NKILSSVQAMRT 974

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EphNP_524625.3 EphR_LBD 85..260 CDD:198439 75/191 (39%)
FN3 387..476 CDD:238020 29/99 (29%)
FN3 536..623 CDD:238020 23/90 (26%)
EphA2_TM 644..736 CDD:291255 27/91 (30%)
PTKc_EphR 736..1002 CDD:270629 193/266 (73%)
Pkinase_Tyr 741..999 CDD:285015 188/258 (73%)
SAM_1 1033..1092 CDD:278937 19/58 (33%)
SAM 1039..1092 CDD:197735 18/52 (35%)
Epha4NP_031962.2 EphR_LBD_A4 30..203 CDD:198450 75/192 (39%)
FN3 329..436 CDD:238020 35/149 (23%)
FN3 441..532 CDD:238020 24/95 (25%)
EphA2_TM 562..616 CDD:291255 25/86 (29%)
PTKc_EphR_A 616..882 CDD:270651 193/267 (72%)
Pkinase_Tyr 621..878 CDD:285015 188/258 (73%)
SAM_EPH-A4 911..981 CDD:188944 20/64 (31%)
SAM 915..975 CDD:197735 20/60 (33%)
PDZ-binding. /evidence=ECO:0000255 984..986
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 398 1.000 Domainoid score I745
eggNOG 1 0.900 - - E2759_KOG0196
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 760 1.000 Inparanoid score I548
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45908
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000086
OrthoInspector 1 1.000 - - otm44283
orthoMCL 1 0.900 - - OOG6_100189
Panther 1 1.100 - - LDO PTHR24416
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2895
SonicParanoid 1 1.000 - - X82
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.900

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