DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1909 and RAPSN

DIOPT Version :10

Sequence 1:NP_651928.1 Gene:CG1909 / 43800 FlyBaseID:FBgn0039911 Length:606 Species:Drosophila melanogaster
Sequence 2:NP_001427419.1 Gene:RAPSN / 5913 HGNCID:9863 Length:520 Species:Homo sapiens


Alignment Length:324 Identity:94/324 - (29%)
Similarity:175/324 - (54%) Gaps:12/324 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 KRKIERGRRLYEQNNQTEAVRTWRSALKGTCQREDCFQLLGYLYQAHMDWGKFREAIEFSHQQLG 159
            |::||:|.:||:.|...:|::.|...|:.:......|::||.|..||.:.|:::|.::|:..|:.
Human     7 KQQIEKGLQLYQSNQTEKALQVWTKVLEKSSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVVQID 71

  Fly   160 ISEELDSPNMRAETYLNLSRAHASLGGLERSLSYARHSLYNECGTKCRS---GLVHLTVARVYLE 221
            .:.||:..:...|:||||:|::..|....:::||.:..| ...||:..:   |.|.|::...:|.
Human    72 TARELEDADFLLESYLNLARSNEKLCEFHKTISYCKTCL-GLPGTRAGAQLGGQVSLSMGNAFLG 135

  Fly   222 MGGFSRALEGLQGAYKIATAIGDPSLELQVYVALSELFGRLQDNDKSATYASKAYDLSRSLQLGD 286
            :..|.:|||..:.|.:.|....|..||.:|..:|...:.:::|.:|:..:..||.:|..:...| 
Human   136 LSVFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYEKALFFPCKAAELVNNYGKG- 199

  Fly   287 LNSCHHRA-ALLRMAVSLRKQGELGDAQDYCKEATKLSLISGDQATYTRSIRVMGDIYRNKMDMD 350
             .|..:|| :...|||:.|..|.||.|.:.|:|:.|::|..||:......:....||:|::.|::
Human   200 -WSLKYRAMSQYHMAVAYRLLGRLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHRSRGDLE 263

  Fly   351 RAFRQYEQAMGTSASLGDRMAQMEAMDGAARCLETLRLQNKICNCRPLEFNTRLLEVASSIGAK 414
            .||.:|:.||.....:|:|:.|::|:.|.|:|....:..:|     .|:...|..::|..:|.|
Human   264 TAFPRYDSAMSIMTEIGNRLGQVQALLGVAKCWVARKALDK-----ALDAIERAQDLAEEVGNK 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1909NP_651928.1 Rapsyn_N 89..168 CDD:431369 22/72 (31%)
LapB 92..386 CDD:442196 88/294 (30%)
TPR repeat 94..122 CDD:276809 9/26 (35%)
TPR repeat 127..164 CDD:276809 10/36 (28%)
TPR repeat 171..198 CDD:276809 9/26 (35%)
TPR repeat 211..237 CDD:276809 8/25 (32%)
TPR repeat 248..278 CDD:276809 7/29 (24%)
TPR repeat 293..321 CDD:276809 12/28 (43%)
TPR repeat 333..360 CDD:276809 7/26 (27%)
RING-H2_Rapsyn 452..503 CDD:438141
RAPSNNP_001427419.1 TPR 1 6..39 10/31 (32%)
TPR 2 83..116 11/33 (33%)
TPR 3 123..156 10/32 (31%)
TPR 4 163..196 7/32 (22%)
TPR 5 206..239 13/32 (41%)
TPR 6 246..279 9/32 (28%)
TPR 7 286..319 8/37 (22%)
Blue background indicates that the domain is not in the aligned region.

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